Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2099746	2099783	38	2 [0]	[0] 2	wzy	O16 family O‑antigen polymerase

ATCCGAAAAAGCAGTATAAACATTTGTTGGCAAACCCACCCACACAAATTCTTTATGCAACGACATAGAGACTCCACCTGTTAATAGCCC  >  NZ_CP009273/2099784‑2099873 |                                                                                          aTCCGAAAAAGCAGTATAAACATTTGTTGGCACACCCACCCACACAAATTCTTTATGCAACGACATAGAGACTCCACCTGTTAATAGccc  >  2:160729/1‑90 (MQ=255) aTCCGAAAAAGCAGTATAAACATTTGTTGGCAAACCCACCCACACAAATTCTTTATGCAACGACATAGAGACTCCACCTGTTAATAGccc  >  1:267154/1‑90 (MQ=255) |                                                                                          ATCCGAAAAAGCAGTATAAACATTTGTTGGCAAACCCACCCACACAAATTCTTTATGCAACGACATAGAGACTCCACCTGTTAATAGCCC  >  NZ_CP009273/2099784‑2099873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑