Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2677244	2677259	16	2 [1]	[0] 2	yphH	ROK family protein

AATACTATTATTCGCCAGACAGGATTTAACCCGTTCGACCGCGACGA  >  NZ_CP009273/2677260‑2677306 |                                               aaTACTATTATTCGCCAGACAGGATTTAACCCGTTCGACCGcgacga  >  1:178155/1‑47 (MQ=255) aaTACTATTATTCGCCAGACAGGATTTAACCCGTTCGACCGcgacga  <  2:178155/47‑1 (MQ=255) |                                               AATACTATTATTCGCCAGACAGGATTTAACCCGTTCGACCGCGACGA  >  NZ_CP009273/2677260‑2677306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑