Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2951697	2951740	44	2 [1]	[0] 2	ptrA	pitrilysin

GCGTTCACCGCATTACGCTCACGTTCGGCATATTTCTTGTCGAGCAAAGGTTCAGCAATAGCATCGGCCAGGCGGTCTACCGCACCAGGC  >  NZ_CP009273/2951741‑2951830 |                                                                                          gCGTTCACCGCATTACGCTCACGTTCGGCATATTTCTTGTCGAGCAAAGGTTCAGCAATAGCATCGGCCAGGCGGTCTACCGCACCAGGc  >  1:88200/1‑90 (MQ=255) gCGTTCACCGCATTACGCTCACGTTCGGCATATTTCTTGTCGAGCAAAGGTTCAGCAATAGCATCGGCCAGGCGGGCTACCGCACCAGGc  >  1:134420/1‑90 (MQ=255) |                                                                                          GCGTTCACCGCATTACGCTCACGTTCGGCATATTTCTTGTCGAGCAAAGGTTCAGCAATAGCATCGGCCAGGCGGTCTACCGCACCAGGC  >  NZ_CP009273/2951741‑2951830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑