Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3306031	3306038	8	2 [0]	[1] 3	truB	tRNA pseudouridine(55) synthase TruB

TACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGAC  >  NZ_CP009273/3306034‑3306123      |                                                                                     taCGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGcgacgac  >  2:16340/1‑90 (MQ=255)      ttCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGcaaca                                <  1:51886/55‑1 (MQ=255)      ttCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGcaaca                                >  2:51886/1‑55 (MQ=255)      |                                                                                     TACGTTTCACTTTTTGCAGCGCATCGTTGCTGGACATACCCTGAGGTTTATCCAGCAACAAAACGCCGTTAATGTCGCGACCGCGACGAC  >  NZ_CP009273/3306034‑3306123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑