Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3791085	3791095	11	2 [1]	[0] 3	waaL	O‑antigen ligase

GAATCGCTATAATGAAGCATTAAATGACTTAAACAGTTATACCAATGCTAATAGTGTTACTTCCCTAGGTGCAAGACTGGCAATGTACGA  >  NZ_CP009273/3791096‑3791185 |                                                                                          gAATCGCTATAATGAAGCATTAAATGACTTAAACAGTTATACCa                                                >  1:171722/1‑44 (MQ=255) gAATCGCTATAATGAAGCATTAAATGACTTAAACAGTTATACCa                                                <  2:171722/44‑1 (MQ=255) gAATCGCTATAATGAAGCATTAAATGACTTAAACAGTTATACCAATGCTAATAGTGTTACTTCCCTAGGTGCAAGACTGGCAATGTACGa  >  2:197366/1‑90 (MQ=255) |                                                                                          GAATCGCTATAATGAAGCATTAAATGACTTAAACAGTTATACCAATGCTAATAGTGTTACTTCCCTAGGTGCAAGACTGGCAATGTACGA  >  NZ_CP009273/3791096‑3791185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑