| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3512449 | 0 (0.000) | 10 (0.810) | 10/166 | 0.3 | 100% | intergenic (‑26/+375) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ |
| ? | NZ_CP009273 | 3576788 = | NA (NA) | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein | |||||
TTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAAT > NZ_CP009273/3512373‑3512534 | ttttCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgcca > 2:57787‑M1/1‑77 (MQ=255) tAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttag < 2:100539‑M1/90‑28 (MQ=255) aGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggt < 1:104860‑M1/90‑39 (MQ=255) atTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttga > 2:126217‑M1/1‑44 (MQ=255) taaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGa > 2:307560‑M2/33‑90 (MQ=255) gCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt < 1:71864‑M1/90‑50 (MQ=255) aacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 1:307560‑M2/61‑1 (MQ=255) aacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 1:76159‑M2/61‑1 (MQ=255) actatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTc > 2:359454‑M2/27‑90 (MQ=255) tcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATaa < 1:150923‑M2/68‑1 (MQ=255) tttCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt < 1:126217‑M1/90‑67 (MQ=255) tggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCg > 1:113215‑M2/14‑90 (MQ=255) cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATg < 1:93281‑M2/52‑1 (MQ=255) cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATg > 2:267785‑M2/8‑59 (MQ=255) cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATg < 1:267785‑M2/52‑1 (MQ=255) cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATg > 2:93281‑M2/8‑59 (MQ=255) aGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtc < 1:276648‑M1/90‑81 (MQ=255) gACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcc > 1:26341‑M1/1‑9 (MQ=255) tATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc > 1:148182‑M1/1‑6 (MQ=255) aTTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc > 1:293630‑M1/1‑5 (MQ=255) | TTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAAT > NZ_CP009273/3512373‑3512534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |