New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	286345 =	NA (NA)	12 (0.980)	7/166	0.5	100%	intergenic (+2/+15)	BW25113_RS23270/BW25113_RS01405	YfjI family protein/IS1‑like element IS1B family transposase
	?	NZ_CP009273	3512441 =	0 (0.000)					intergenic (‑18/+383)	aroK/hofQ	shikimate kinase AroK/DNA uptake porin HofQ

TTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGA  >  NZ_CP009273/3512373‑3512530                                                                     |                                                                                          ttttCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgcca                                                                      >  2:57787‑M1/1‑77 (MQ=255)               tAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttag                                                        <  2:100539‑M1/90‑28 (MQ=255)                          aGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggt                                             <  1:104860‑M1/90‑39 (MQ=255)                                gaacataaaacactatcaataagttggagtcattaccg                                                                                           <  2:367608‑M2/1‑1 (MQ=255)                                gaacataaaacactatcaataagttggagtcattaccg                                                                                           >  1:367608‑M2/38‑38 (MQ=255)                                  atTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttga                                     >  2:126217‑M1/1‑44 (MQ=255)                                     taaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGa                                  >  2:307560‑M2/33‑90 (MQ=255)                                     gCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt                                  <  1:71864‑M1/90‑50 (MQ=255)                                        aacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc                               <  1:307560‑M2/61‑1 (MQ=255)                                        aacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc                               <  1:76159‑M2/61‑1 (MQ=255)                                           actatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTc                            >  2:359454‑M2/27‑90 (MQ=255)                                               tcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATaa                        <  1:150923‑M2/68‑1 (MQ=255)                                                      tttCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt                 <  1:126217‑M1/90‑67 (MQ=255)                                                        tggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCg               >  1:113215‑M2/14‑90 (MQ=255)                                                              cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATg                                        >  2:267785‑M2/8‑59 (MQ=255)                                                              cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATg                                        <  1:93281‑M2/52‑1 (MQ=255)                                                              cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATg                                        <  1:267785‑M2/52‑1 (MQ=255)                                                              cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATg                                        >  2:93281‑M2/8‑59 (MQ=255)                                                                    aGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtc   <  1:276648‑M1/90‑81 (MQ=255)                                                                     gACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcc  >  1:26341‑M1/1‑9 (MQ=255)                                                                     |                                                                                          TTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGA  >  NZ_CP009273/3512373‑3512530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.