Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1340024	1340035	12	2 [0]	[1] 3	pdeR	cyclic di‑GMP phosphodiesterase

AGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGCCATTGCTTCCAGCGCGCTTTGTG  >  NZ_CP009273/1339934‑1340023                                                                                          | aGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGCCATTGCTTCCAGCGCGCTTtgtg  <  1:179030/90‑1 (MQ=255) aGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGCCATTGCTTCCAGCGCGCTTtgtg  <  2:60058/90‑1 (MQ=255)                                                                                          | AGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGCCATTGCTTCCAGCGCGCTTTGTG  >  NZ_CP009273/1339934‑1340023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑