Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2669831	2669850	20	2 [1]	[1] 2	yphD	ABC transporter permease

CCCCATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGGCAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATC  >  NZ_CP009273/2669741‑2669834                                                                                          |     ccccATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGGCAACGAAACTTGGTACATTAAACACGCCGCACAGCACCCCGGCCAGCGTTcc      >  1:332028/1‑90 (MQ=255)     aTTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGGCAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATc  >  1:229533/1‑90 (MQ=255)                                                                                          |     CCCCATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGGCAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATC  >  NZ_CP009273/2669741‑2669834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑