Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4240848	4240860	13	2 [0]	[1] 2	BW25113_RS20970	SopA family protein

TATCAGCAATATTTTTTCAAATATAAAACAACGGAACGAAAAAATCATGCAATAAATATGTTTCGTGAAGTCTCAAT  >  NZ_CP009273/4240771‑4240847                                                                             | tatCAGCAATATTTTTTCAAATATAAAACAACGGAACGAAAAAATCATGCAATAAATATGTTTCATGAAGTCTCAAt  <  1:111783/77‑1 (MQ=255) tatCAGCAATATTTTTTCAAATATAAAACAACGGAACGAAAAAATCATGCAATAAATATGTTTCATGAAGTCTCAAt  >  2:111783/1‑77 (MQ=255)                                                                             | TATCAGCAATATTTTTTCAAATATAAAACAACGGAACGAAAAAATCATGCAATAAATATGTTTCGTGAAGTCTCAAT  >  NZ_CP009273/4240771‑4240847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑