Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1046254	1046264	11	2 [0]	[1] 3	BW25113_RS05135/cspH	IS1‑like element IS1D family transposase/cold shock‑like protein CspH

TTGTTACGAAAGCTATTAATTATTGTTGGTAATATAGTTTCAAGT  >  NZ_CP009273/1046209‑1046253                                             | ttGTTACGAAAGCTATTAATTATTGTTGGTAATATAGTTTCAAGt  >  1:79908/1‑45 (MQ=255) ttGTTACGAAAGCTATTAATTATTGTTGGTAATATAGTTTCAAGt  <  2:79908/45‑1 (MQ=255)                                             | TTGTTACGAAAGCTATTAATTATTGTTGGTAATATAGTTTCAAGT  >  NZ_CP009273/1046209‑1046253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑