Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1646262	1646266	5	2 [0]	[0] 2	BW25113_RS25635	tyrosine‑type recombinase/integrase

ACCATTCCGGATCCTCTTTCGCGGGAAGAATTTATCCGTCTTATCGATG  >  NZ_CP009273/1646267‑1646315 |                                                 aCCATTCCGGATCCTCTTTCGCGGGAAGAATTTATCCGTCTTATCGATg  >  1:120681/1‑49 (MQ=255) aCCATTCCGGATCCTCTTTCGCGGGAAGAATTTATCCGTCTTATCGATg  <  2:120681/49‑1 (MQ=255) |                                                 ACCATTCCGGATCCTCTTTCGCGGGAAGAATTTATCCGTCTTATCGATG  >  NZ_CP009273/1646267‑1646315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑