Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1999670	1999702	33	2 [1]	[0] 2	amyA	alpha‑amylase

GAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTAT  >  NZ_CP009273/1999703‑1999743 |                                         gAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTAt  <  1:33046/41‑1 (MQ=255) gAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTAt  >  2:33046/1‑41 (MQ=255) |                                         GAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTAT  >  NZ_CP009273/1999703‑1999743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑