Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2779678	2779760	83	3 [1]	[0] 4	[BW25113_RS26005]	[BW25113_RS26005]

TTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCAT  >  NZ_CP009273/2779761‑2779816 |                                                        ttCTATAAAACCAGGACCCAGAAATTTACCTATCGACa                    >  1:85020/1‑38 (MQ=255) ttCTATAAAACCAGGACCCAGAAATTTACCTATCGACa                    <  2:85020/38‑1 (MQ=255) ttCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCAt  <  1:168955/56‑1 (MQ=255) ttCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCAt  >  2:168955/1‑56 (MQ=255) |                                                        TTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCAT  >  NZ_CP009273/2779761‑2779816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑