Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3996568	3996602	35	2 [0]	[1] 3	[BW25113_RS19825]	[BW25113_RS19825]

GTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTAC  >  NZ_CP009273/3996575‑3996664                             |                                                              gTCTCCGGGCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGAGGTTCTAc  >  2:289487/1‑90 (MQ=255)                             ctctCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGa          >  1:135171/1‑54 (MQ=255)                             ctctCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGa          <  2:135171/54‑1 (MQ=255)                             |                                                              GTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTAC  >  NZ_CP009273/3996575‑3996664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑