Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1164414	1164451	38	2 [1]	[0] 2	comR/bhsA	TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA

CAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATT  >  NZ_CP009273/1164452‑1164492 |                                         cAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAAtt  >  1:214406/1‑41 (MQ=255) cAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAAtt  <  2:214406/41‑1 (MQ=255) |                                         CAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATT  >  NZ_CP009273/1164452‑1164492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑