| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 726,489 | A→G | E484G (GAA→GGA) | rhsC → | rhs element protein RhsC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 726,489 | 0 | A | G | 100.0% | 16.6 / NA | 6 | E484G (GAA→GGA) | rhsC | rhs element protein RhsC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (3/3); total (3/3) | |||||||||||
CCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAC > NZ_CP009273/726408‑726555 | ccacGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGGAATACGcc < 2:322154/90‑1 (MQ=255) ccGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGGAATACGCCGGGaa > 1:37618/1‑90 (MQ=255) tGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGGAATACGCCGGGAATatga < 1:288676/90‑1 (MQ=255) gggCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGGAATACGCCGGGAATATGATGAAt > 2:297982/1‑90 (MQ=255) caGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGcccc > 2:123673/1‑90 (MQ=255) aGCCACCGGGCCTGACGGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAc < 2:166829/90‑1 (MQ=255) | CCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAC > NZ_CP009273/726408‑726555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |