| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3541266 = | 157 (1.330) | 9 (0.090) | 8/142 | 3.8 | 6.8% | intergenic (+32/+79) | gntT/malQ | gluconate transporter/4‑alpha‑glucanotransferase |
| ? | NZ_CP009273 | 3541310 = | 114 (1.160) | intergenic (+76/+35) | gntT/malQ | gluconate transporter/4‑alpha‑glucanotransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGAGCTGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3541368‑3541266‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccggataagACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTTCAGCA > NZ_CP009273/3541310‑3541394 AGAGCTGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCG > 2:3135595/1‑90 GAGCTGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGT < 1:951947/90‑1 AGCTGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTA < 1:117708/90‑1 AGCTGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTA > 2:1091574/1‑90 AGCTGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTA > 2:1007993/1‑90 AGCTGCAGCGAAGAAGAAGTAGAGTGCGGGTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTA > 2:442372/1‑90 GCTGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAG < 1:1334593/90‑1 TGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGC < 2:275077/90‑1 TGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGC < 2:2673290/90‑1 TGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGC < 2:2587592/90‑1 TGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGC < 1:2172321/90‑1 GCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCC > 2:422088/1‑90 GCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCC > 2:2233555/1‑90 GCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCC > 2:1195025/1‑90 GCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCC > 1:53926/1‑90 CGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGAT < 1:1312427/90‑1 GAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATA > 1:1699597/1‑90 GAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATA > 1:3024303/1‑90 GAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATA > 2:809817/1‑90 GAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATA > 2:1960137/1‑90 GAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATA > 2:1032510/1‑90 AAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAA < 2:375692/90‑1 AGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAG < 1:3066102/90‑1 AGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAG > 1:351968/1‑90 TAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGACGCGTCA < 2:2854741/90‑1 TGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGACGCGTCAAGCAT < 1:2068439/90‑1 TGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAAC < 1:325878/90‑1 GCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACC < 2:1824282/90‑1 GATGCTTGACGCGTCTTATCCGGCCTCCTAATTCACCCCGAACCGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGC < 2:2646879/90‑1 CGTCTTATCCGGCCTACTAATTCATCCCCAATCGTAGGCCGGATAAGCCGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCT < 2:3067172/90‑1 TATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTC < 1:2020919/90‑1 TCATCCCGAATCGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTC < 1:1539935/74‑1 TCATCCCGAATCGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTC > 2:1539935/1‑74 GTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAAT > 2:1246893/1‑90 GTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAAT > 2:1614532/1‑90 GTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAAT > 2:2828307/1‑90 GTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAAT > 1:1671674/1‑90 GTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGC < 2:1355712/67‑1 GTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGC > 1:1355712/1‑67 AGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCC < 1:1891329/90‑1 AGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCC > 2:3140097/1‑90 AGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCC > 1:1776439/1‑90 AGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCC < 1:2837440/90‑1 GCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTT > 2:87562/1‑90 GCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTT > 1:1511316/1‑90 GCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTT > 1:1600485/1‑90 GCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTT > 2:2482601/1‑90 GCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTT > 2:2066030/1‑90 GCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTT > 1:491339/1‑90 GCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCA > 1:3252979/1‑83 GCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCA < 2:3252979/83‑1 GCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGC < 2:2104449/42‑1 GCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGC > 1:2104449/1‑42 CCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTTC > 1:2265964/1‑90 CCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTTC > 2:126455/1‑90 CCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTTC > 2:743854/1‑90 CCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAA > 2:3386252/1‑83 CCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAA < 1:3386252/83‑1 CCGGATAAGACGAGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTTC > 1:3352316/1‑90 GGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTTCAG > 2:1836411/1‑90 GGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTTCAG < 2:2775860/90‑1 GGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGC > 2:3016/1‑60 GGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGC < 1:3016/60‑1 ATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTTCAGCA < 1:365098/90‑1 AGAGCTGCAGCGAAGAAGAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3541368‑3541266‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccggataagACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGTCTGTCCAAATCCTTCAGCA > NZ_CP009273/3541310‑3541394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |