Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP009273883,4700TG47.0% 113.3 / 23.5 100intergenic (+55/+120)rcdA/ybjLDNA‑binding transcriptional regulator RcdA/aspartate:alanine antiporter
Reads supporting (aligned to +/- strand):  ref base T (16/37);  new base G (47/0);  total (63/37)
Fisher's exact test for biased strand distribution p-value = 4.61e-15
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGC  >  NZ_CP009273/883386‑883557
                                                                                    |                                                                                       
ttGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATg                                                                                    <  1:816280/90‑1 (MQ=255)
 tGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATgg                                                                                   <  1:2610038/90‑1 (MQ=255)
 tGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATgg                                                                                   <  1:2752148/90‑1 (MQ=255)
      aTGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTcc                                                                              >  1:1790031/1‑90 (MQ=255)
      aTGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGGTgggggcc                                                                              >  2:1626770/1‑86 (MQ=255)
      aTGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGGTGGGCTcc                                                                              >  1:38838/1‑90 (MQ=255)
            gagaGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACaaaa                                                                        <  1:2129915/90‑1 (MQ=255)
             agagGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTGGATGGGGTCCACaaaaa                                                                       >  2:2964805/1‑89 (MQ=255)
                 ggTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATgggg                                                                   <  1:1014891/90‑1 (MQ=255)
                 ggTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATgggg                                                                   <  1:2822223/90‑1 (MQ=255)
                   ttGCAGGGTAGTAGATAAGTTTTAGATAATAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGGTCCCCAAAAAgggggc                                                                 >  1:2490206/1‑88 (MQ=255)
                   ttGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAAAAGGGAc                                                                 >  1:1125508/1‑90 (MQ=255)
                   ttGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCCCCACAAAATtggggc                                                                 >  1:2238572/1‑88 (MQ=255)
                   ttGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGGTGGACTCCCCAAAAAAGGGaa                                                                 >  2:3147931/1‑89 (MQ=255)
                   ttGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGGTCCACAAAATTGGGAc                                                                 >  1:412319/1‑90 (MQ=255)
                   ttGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATgggggc                                                                 >  1:144605/1‑88 (MQ=255)
                   ttGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGAc                                                                 >  1:777719/1‑90 (MQ=255)
                      cAGGGTAGTAGATTAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATc                                                              <  2:2620288/90‑1 (MQ=255)
                      cAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATc                                                              <  1:2463220/90‑1 (MQ=255)
                          gtagtaGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATggggt                                                                                >  2:2528287/1‑66 (MQ=255)
                          gtagtaGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCt                                                                                <  1:2528287/68‑1 (MQ=255)
                          gtagtaGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGGTGGGCTCCACAAAAAGGGGGCATCaaaa                                                          >  2:2211786/1‑89 (MQ=255)
                          gtagtaGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGGTCCACAAAAAATGGGCATCaaaa                                                          >  2:2020759/1‑89 (MQ=255)
                           tagtagATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCca                                                                             <  2:1353153/70‑1 (MQ=255)
                           tagtagATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGGCCCACAAAAAAGGGACATCaaaaa                                                         >  2:2587907/1‑88 (MQ=255)
                           tagtagATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCca                                                                             >  1:1353153/1‑70 (MQ=255)
                           tagtagATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGGCATCAAAGa                                                         >  1:2464149/1‑90 (MQ=255)
                           tagtagATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAAAGGGGGCATCAAAGa                                                         >  1:569684/1‑90 (MQ=255)
                             gtagATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGaaa                                                       <  2:3293417/90‑1 (MQ=255)
                              tagATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGaaaa                                                      <  2:777719/90‑1 (MQ=255)
                                 aTAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAAAGGGGGCATCAAAAAAAAACa                                                   >  1:3404800/1‑90 (MQ=255)
                                  tAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAg                                                  <  2:1449655/90‑1 (MQ=255)
                                  tAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAg                                                  <  1:314562/90‑1 (MQ=255)
                                  tAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAAAAGGGGCATCAAAAAAAAGCAg                                                  >  2:2760330/1‑90 (MQ=255)
                                  tAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGGCATCAAAGAAAAACAg                                                  >  1:2660815/1‑90 (MQ=255)
                                  tAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAACAg                                                  >  1:1232735/1‑90 (MQ=255)
                                  tAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAAAGGGGACATCAAAGAAAAACAg                                                  >  1:2164300/1‑90 (MQ=255)
                                  tAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGAGGGGGTCCACAAAAAGGGGGCATCAAAGAAaagaag                                                  >  2:1345793/1‑90 (MQ=255)
                                   aaGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAAAGGGGACATCAAAGAAAAACAGt                                                 >  1:505876/1‑90 (MQ=255)
                                    aGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTg                                                >  1:805132/1‑90 (MQ=255)
                                    aGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGGTGGGGTCCCCAAAAAGGGGACATCAAAAAAAAACAGTg                                                >  2:1228895/1‑90 (MQ=255)
                                    aGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGGTCCACAAAAAAGGGACATCAAAAAAAAAAAGTg                                                >  2:2098541/1‑90 (MQ=255)
                                    aGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGGTCCACAAAAAAGGGACAACAAAAAAAAACAggg                                                >  2:2578737/1‑88 (MQ=255)
                                    aGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAAAGGGGGCATCAAAAAAAAACAGTg                                                >  1:821956/1‑90 (MQ=255)
                                    aGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGAGGGGGGCCACAAAAAAGGGGGATCAAAAAAAAGCAGTg                                                >  2:1649257/1‑90 (MQ=255)
                                      ttttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGc                                              <  1:1228895/90‑1 (MQ=255)
                                       tttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAACAGGGGCa                                             >  1:3043421/1‑90 (MQ=255)
                                       tttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATTGGCCCCCCAAAAAGGGGACATCAAAAAAAAACAGTGGCa                                             >  1:3141934/1‑90 (MQ=255)
                                       tttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGGCATCAAAAAAAAACAGTGGCa                                             >  1:2520148/1‑90 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGGAAAGCAGTGGCAc                                            <  1:2949141/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  2:2633590/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  2:822706/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  2:805132/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  2:874137/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  2:1993855/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  1:2242010/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  2:2873270/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  2:1131474/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  1:1345793/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  2:3161457/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  2:2265289/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  1:3079901/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  1:713637/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAc                                            <  1:1106884/90‑1 (MQ=255)
                                        ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAAAGGGGGCATCAAAGAAAAGCAGTGGCAc                                            >  1:1252911/1‑90 (MQ=255)
                                         tAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGc                                                                                 <  2:706846/52‑1 (MQ=255)
                                         tAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGc                                                                                 >  1:706846/1‑52 (MQ=255)
                                              aaCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGGACTAATTa                                      >  1:2618431/1‑90 (MQ=255)
                                              aaCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTa                                      >  1:2225413/1‑90 (MQ=255)
                                              aaCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGACATCAAAAAAAAGCAGGGGCACTAATTa                                      >  1:1416360/1‑90 (MQ=255)
                                               aCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAaaaaaa                                                       >  1:789507/1‑72 (MQ=255)
                                               aCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGaaa                                                       <  2:789507/72‑1 (MQ=255)
                                               aCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGaaa                                                       <  2:997807/72‑1 (MQ=255)
                                               aCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGaaa                                                       >  1:997807/1‑72 (MQ=255)
                                               aCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGGTCCCCAAAATGGGGACATCAAAAAAAAACAGTGGGACTAATTaa                                     >  1:1931276/1‑90 (MQ=255)
                                               aCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAACAGTGGGACTAATTaa                                     >  1:732822/1‑90 (MQ=255)
                                               aCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAACAGTGGCACTAATTaa                                     >  1:1649673/1‑90 (MQ=255)
                                               aCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGAGGGGGTCCACAAAAAAGGGACATCAAAAAAAAACAGGGGGACTAAATaa                                     >  2:2960330/1‑90 (MQ=255)
                                               aCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGGGATGGGGTCCACAAAAAAGGGGCATCAAAAAAAAGAAGTGGGACTAATTaa                                     >  2:1652035/1‑90 (MQ=255)
                                                        ccATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGc                            <  2:2498063/90‑1 (MQ=255)
                                                         cATCAACCTTGAACCGAAATGGCGGGGGTGGTGGGGTCCACAAAAAGGGGACATCAAAAAAAAACAGGGGGACTAATTAAGACTGATGcc                           >  2:2021122/1‑90 (MQ=255)
                                                         cATCAACCTTGAACCGAAATGGCGGGGGTGATGGGGTCCACAAAAAAGGGGCAACAAAAAAAAAAAGGGGCACTAATTAAGACTGATGcc                           >  2:1485596/1‑90 (MQ=255)
                                                         cATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCCCAAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGcc                           >  1:2876227/1‑90 (MQ=255)
                                                         cATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAAAGGGGACATCAAAAAAAAACAGGGGCACTAATTTAAACTGATGcc                           >  1:854671/1‑90 (MQ=255)
                                                          aTCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCCCAAAATGGGGACATCAAAGAAAAACACTGGCACTAAATAATACTGATGccc                          >  1:2343489/1‑90 (MQ=255)
                                                          aTCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAACAATGGCCCTAATTAAGACTGATGccc                          >  1:211213/1‑90 (MQ=255)
                                                                cTTGAACCGAAATGGCGGGGGTGATGGGCCCCACAAAATAGGGACATCAAAGAAAAACAGGGGGACTAATTAAAACTGATGCCCTGCGGa                    >  2:2981504/1‑90 (MQ=255)
                                                                 ttGAACCGAAATGGCGGGGGTGATGGGGTCCACAAAAAGGGGACATCAAAAAAAAACAGGGGGACTAATTAAGACTGATGCCCTGCggga                   >  2:243544/1‑88 (MQ=255)
                                                                 ttGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGGCATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGaa                   >  1:3376272/1‑90 (MQ=255)
                                                                 ttGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGaa                   >  1:977628/1‑90 (MQ=255)
                                                                  tGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGaaa                  <  2:2088590/90‑1 (MQ=255)
                                                                  tGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAATGGGGACATCAAAAAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGaaaa                 >  1:1368126/1‑90 (MQ=255)
                                                                   gAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCACCAATTAAGACTGATGCCCTGCGGaaaa                 <  2:693313/90‑1 (MQ=255)
                                                                   gAACCGAAATGGCGGGGGTGATGGGCTCCACAAAATGGGGGGATCAAAAAAAAACAGTGGCACTAATTAAAACTGATGCCCTGCGGaaaa                 >  2:218652/1‑90 (MQ=255)
                                                                        gAAATGGCGGGGTTGATGGGGTCCACAAAATGGGGACAACAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCCGCGGGAAAGTTCt            >  1:2722623/1‑90 (MQ=255)
                                                                        gAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCt            >  1:3301692/1‑90 (MQ=255)
                                                                        gAAATGGCGGGGGTGATGGGCTCCACAAAAAGGGGACATCAAAAAAAAACAGGGGGACTAATTAAAACTGATGCCCTGCGGGAAAGATCt            >  2:3364056/1‑90 (MQ=255)
                                                                         aaaTGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGGGGCACTAATTAAAACTGATGCCCTGCGGAAAAGTTCTg           >  1:357725/1‑90 (MQ=255)
                                                                          aaTGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGc          <  1:2051195/90‑1 (MQ=255)
                                                                                  ggTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGc  >  1:2144081/1‑90 (MQ=255)
                                                                                    |                                                                                       
TTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGC  >  NZ_CP009273/883386‑883557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑