BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP009273	726,489	A→G	E484G (GAA→GGA)	rhsC →	rhs element protein RhsC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	726,489	0	A	G	100.0%	452.1 / NA	117	E484G (GAA→GGA)	rhsC	rhs element protein RhsC
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (61/56); total (61/56)

Only 100 of 118 total aligned reads displayed.

GCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGAAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATC  >  NZ_CP009273/726402‑726575

gcATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGgaa                                                                                      >  2:2145312/1‑90 (MQ=255)

      ccacGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGcc                                                                                <  2:1704487/90‑1 (MQ=255)

       cacGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCg                                                                               <  2:1075448/90‑1 (MQ=255)

        acGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCgg                                                                              >  2:650071/1‑90 (MQ=255)

        acGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCgg                                                                              <  2:1625807/90‑1 (MQ=255)

        acGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCgg                                                                              >  2:2271015/1‑90 (MQ=255)

             ggttGGCAGGGCATCGGCGTTTTACTATAACCCCCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAata                                                                         <  2:716447/87‑1 (MQ=14)

             ggATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAata                                                                         >  2:1402820/1‑90 (MQ=255)

             ggATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAata                                                                         >  2:230044/1‑90 (MQ=255)

             ggATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAata                                                                         >  2:1063122/1‑90 (MQ=255)

              gATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAatat                                                                        >  2:3112168/1‑90 (MQ=255)

                tGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATatga                                                                      <  2:1187573/90‑1 (MQ=255)

                   cAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGcc                                                                                <  2:2187249/77‑1 (MQ=255)

                     gggCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAAt                                                                                     <  2:2718967/70‑1 (MQ=255)

                     gggCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAAt                                                                                     >  1:2718967/1‑70 (MQ=255)

                      ggCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATg                                                                <  1:346915/90‑1 (MQ=255)

                       gCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGACTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATgg                                                               >  1:677025/1‑90 (MQ=255)

                        cATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATggg                                                              >  2:118315/1‑90 (MQ=255)

                         aTCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATgggg                                                             >  2:119411/1‑90 (MQ=255)

                          tCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCATCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGc                                                            >  1:571536/1‑90 (MQ=255)

                          tCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGc                                                            >  1:2312732/1‑90 (MQ=255)

                          tCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGc                                                            <  2:2642692/90‑1 (MQ=255)

                              cGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTc                                                        <  1:2274316/90‑1 (MQ=255)

                              cGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTc                                                        <  2:1741827/90‑1 (MQ=255)

                               gTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCt                                                       <  1:2136934/90‑1 (MQ=255)

                                       ataACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAgg                                               >  1:1609433/1‑90 (MQ=255)

                                       ataACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAgg                                               >  2:1214634/1‑90 (MQ=255)

                                       ataACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAgg                                               >  2:2728419/1‑90 (MQ=255)

                                          accaccACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGaaa                                            >  1:2177770/1‑90 (MQ=255)

                                           ccaccaCAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAAc                                           <  1:758946/90‑1 (MQ=255)

                                              ccacAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGaa                                                                           <  1:3100271/55‑1 (MQ=255)

                                              ccacAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACt                                          >  1:2862854/1‑88 (MQ=255)

                                              ccacAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACt                                          <  2:2862854/88‑1 (MQ=255)

                                              ccacAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGc                                        >  2:2877270/1‑90 (MQ=255)

                                              ccacAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGc                                        >  1:1021746/1‑90 (MQ=255)

                                              ccacAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGc                                        >  2:2498340/1‑90 (MQ=255)

                                              ccacAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGc                                        >  1:157449/1‑90 (MQ=255)

                                              ccacAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGc                                        >  1:2773681/1‑90 (MQ=255)

                                                 caGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGcccc                                     >  2:290832/1‑90 (MQ=255)

                                                   gCCAGTTAACGTCAGCCACCTGGCCTGAC‑GGCCTGGGAAAACGCCGGGAATATGATGAATGCGGCCCTCCGATTCAGGAAACTGCCCCTg                                   >  2:550218/1‑90 (MQ=14)

                                                   gCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTg                                   >  1:732845/1‑90 (MQ=255)

                                                   gCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTg                                   >  1:2220370/1‑90 (MQ=255)

                                                   gCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTg                                   >  1:2877480/1‑90 (MQ=255)

                                                   gCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTg                                   >  2:3391876/1‑90 (MQ=255)

                                                   gCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTg                                   >  2:634199/1‑90 (MQ=255)

                                                   gCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTg                                   <  2:710480/90‑1 (MQ=255)

                                                   gCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTg                                   <  2:732845/90‑1 (MQ=255)

                                                    ccAGTTAACGTCAGCCACCGGGCCTGACGGGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTg                                   <  1:2465877/90‑1 (MQ=14)

                                                    ccAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGa                                  <  1:1063122/90‑1 (MQ=255)

                                                     cAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGAc                                 >  2:1019567/1‑90 (MQ=255)

                                                       gTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGaa                                                                           <  1:2864837/46‑1 (MQ=255)

                                                       gTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGaa                                                                           >  2:2864837/1‑46 (MQ=255)

                                                        ttAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGc                              <  1:3112168/90‑1 (MQ=255)

                                                        ttAACGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGc                              >  1:2637606/1‑90 (MQ=255)

                                                           aCGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAg                                                <  2:276306/69‑1 (MQ=255)

                                                            cGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCt                                                       >  2:76535/1‑61 (MQ=255)

                                                            cGTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCt                                                       <  1:76535/61‑1 (MQ=255)

                                                             gTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGatat                         <  1:1026564/90‑1 (MQ=255)

                                                             gTCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGatat                         <  1:2822603/90‑1 (MQ=255)

                                                              tCAGCCACCGGGCCTTAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGTTTCAGGAAACTGCCCCTGACGGCGATATc                        >  2:3293602/1‑90 (MQ=14)

                                                              tCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATc                        >  2:57993/1‑90 (MQ=255)

                                                              tCAGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATc                        <  2:2791182/90‑1 (MQ=255)

                                                                aGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAc                      >  1:2516928/1‑90 (MQ=255)

                                                                aGCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAc                      >  1:3264267/1‑90 (MQ=255)

                                                                 gCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAAc                                           <  2:1057572/68‑1 (MQ=255)

                                                                 gCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAAc                                           >  1:1057572/1‑68 (MQ=255)

                                                                 gCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAcc                     >  1:1013291/1‑90 (MQ=255)

                                                                 gCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAcc                     <  1:302027/90‑1 (MQ=255)

                                                                 gCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAcc                     >  1:2611559/1‑90 (MQ=255)

                                                                 gCCACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAcc                     >  1:213620/1‑90 (MQ=255)

                                                                  ccACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAccc                    <  2:353467/90‑1 (MQ=255)

                                                                  ccACCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAccc                    <  2:2177266/90‑1 (MQ=255)

                                                                    aCCGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGc                  >  2:2716754/1‑90 (MQ=255)

                                                                     ccGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCt                 >  1:1340205/1‑90 (MQ=255)

                                                                     ccGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCt                 <  2:2516928/90‑1 (MQ=255)

                                                                     ccGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCt                 <  2:2830528/90‑1 (MQ=255)

                                                                     ccGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCt                 <  2:3264267/90‑1 (MQ=255)

                                                                      cGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTa                <  2:247057/90‑1 (MQ=255)

                                                                      cGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTa                <  2:1021746/90‑1 (MQ=255)

                                                                      cGGGCCTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTa                <  2:2047492/90‑1 (MQ=255)

                                                                           cTGAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGtt           >  2:2143664/1‑90 (MQ=255)

                                                                             gAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTAt         <  2:1609433/90‑1 (MQ=255)

                                                                             gAC‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTAt         >  2:1521270/1‑90 (MQ=255)

                                                                               c‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGATGGCGATATCACCCGCTACCGTTATGa       <  1:2728419/90‑1 (MQ=255)

                                                                               c‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGa       <  2:2891844/90‑1 (MQ=255)

                                                                               c‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGa       <  2:2205495/90‑1 (MQ=255)

                                                                               c‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGa       <  1:919444/90‑1 (MQ=255)

                                                                               c‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGa       <  2:2333597/90‑1 (MQ=255)

                                                                               c‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGa       <  2:2611559/90‑1 (MQ=255)

                                                                               c‑GGGCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGa       <  2:1055666/90‑1 (MQ=255)

                                                                                  ggCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATa     <  2:855825/90‑1 (MQ=255)

                                                                                  ggCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATa     <  2:1144885/90‑1 (MQ=255)

                                                                                  ggCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATa     <  2:22832/90‑1 (MQ=255)

                                                                                   gCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATaa    >  1:251182/1‑90 (MQ=255)

                                                                                   gCTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGCTATGATaa    >  1:117272/1‑90 (MQ=255)

                                                                                   gCTGGGAATACGCAGGGAATATGATGAATGGGGCCGTCTGATGCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATaa    >  2:3301986/1‑90 (MQ=14)

                                                                                    cTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTa                <  1:223750/77‑1 (MQ=255)

                                                                                    cTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTa                >  2:223750/1‑77 (MQ=255)

                                                                                    cTGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAAt   >  2:3204294/1‑90 (MQ=255)

                                                                                     tGGGAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATc  <  2:3044342/90‑1 (MQ=255)

GCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGAC‑GGGCTGGAAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATC  >  NZ_CP009273/726402‑726575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`