Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1133290	1133324	35	3 [1]	[0] 2	flgJ	flagellar assembly peptidoglycan hydrolase FlgJ

CCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGC  >  NZ_CP009273/1133233‑1133322                                                         |                                  ccGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGc  >  2:96260/1‑90 (MQ=255)   gTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCgcgc                                   >  1:257853/1‑55 (MQ=255)   gTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCgcgc                                   <  2:257853/55‑1 (MQ=255)                                                         |                                  CCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGC  >  NZ_CP009273/1133233‑1133322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑