Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1341092	1341115	24	2 [1]	[0] 2	BW25113_RS25050	hypothetical protein

TGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATAT  >  NZ_CP009273/1341002‑1341103                                                                                          |             tgCATATCCTCCGATTACCAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGCCTTACATGAAATTAACGGCGGCTAACCGCATTGtt              <  2:371170/90‑1 (MQ=255)             ggTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTttatat  >  1:353045/1‑90 (MQ=255)                                                                                          |             TGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATAT  >  NZ_CP009273/1341002‑1341103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑