| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 536,014 | 0 | T | G | 54.5% | 4.2 / 10.2 | 11 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| Reads supporting (aligned to +/- strand): ref base T (1/4); new base G (6/0); total (7/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGT > NZ_CP009273/535928‑536103 | gcCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGCTTCT‑CCGGTTTAGgggtg > 1:335963/1‑90 (MQ=255) tCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGt < 1:361431/90‑1 (MQ=255) ggCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CCGGGTAAGGGGGGTTTTTGTTTAATTTTGCAGTCAGCCGCGAAAGCCCGtttt > 1:271633/1‑88 (MQ=255) cTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCCGGTTAGGGGGGGTTTA‑GTTTAATTTTTCAGTCAGCCGCGGAAACCCGTTTTTAggg > 1:250377/1‑89 (MQ=255) gCCCGTCCTTGCGGCGGGCATTCT‑CCGGGTAAGGGGGGGTTATGTTCAATTTTTCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTTAGt > 1:368754/1‑90 (MQ=255) gTCCTTGCGGCGGGCATTTT‑CCCGGTAAGGGGGGTTTATGTTCCAATTTGCCGTCAGCCGCGAAAACCTGTTTTAAGGATTTTAGGGGtt > 1:234023/1‑90 (MQ=255) gggCATTTT‑CCGGGTAAGGGGTGTTTATGTTCAATTTTTCAGGCAGCCGCGAAAGCCTGTTTTCAGGATTTTTGTGGGtttttttttttt > 2:415538/1‑90 (MQ=255) gggCATTCT‑CCGGTTAAGGGGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTAttt > 2:40310/1‑90 (MQ=255) cGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAacac < 2:234023/90‑1 (MQ=255) ggTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGc < 1:266224/84‑1 (MQ=255) ggTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGc > 2:266224/1‑84 (MQ=255) aGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTtgt < 1:40310/90‑1 (MQ=255) tgtgtTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGt > 2:329235/1‑90 (MQ=255) | GCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGT > NZ_CP009273/535928‑536103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |