| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 82062 = | 105 (1.340) | 3 (0.040) | 3/142 | 4.7 | 3.1% | intergenic (‑64/‑55) | BW25113_RS25405/ilvI | protein YabR/acetolactate synthase 3 large subunit |
| ? | NZ_CP009273 | 82155 = | 92 (1.330) | coding (39/1725 nt) | ilvI | acetolactate synthase 3 large subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGATCGGACGACCATCTCGGCTCCAGACAACATCTCCATGGCCTGCCTCACTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTCCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/82156‑82062‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtccgatcGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGCAGTCCTTGATATTTATGATGCATTGCATACCGTGGGTGGT > NZ_CP009273/82155‑82242 gccATCGGACGACCATCTCGGCTCCAGACAACATCTCCATGGCCCGCCTCCCTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTC < 1:62964/87‑1 CGATCGGACGACCATCTCGGCTCCAGACAACATCTCCATGGCCTGCCTCACTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTCC > 2:1975610/1‑90 CGATCGGACGACCATCTCGGCTCCAGACAACATCTCCATGGCCTGCCTCACTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTCC > 1:1844629/1‑90 ATCGGACGACCATCTCGGCTCCAGACAACATCTCCATGGCCTGCCTCACTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTCCGA > 1:1297554/1‑90 CGGACGACCATCTCGGCTCCAGACAACATCTCCATGGCCTGCCTCACTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTCCGATC < 1:1234324/90‑1 CGGACGACCATCTCGGCTCCAGACAACATCTCCATGGCCTGCCTCACTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTCCGATC < 2:2348863/90‑1 CGGACGACCATCTCGGCTCCAGACAACATCTCCATGGCCTGCCTCACTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTCCGATC < 2:1436509/90‑1 CGGACGACCATCTCGGCTCCAGACAACATCTCCATGGCCTGCCTCACTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTCCGATC < 1:1975610/90‑1 GGACGACCATCTCGGCTCCAGACAACATCTCCATGGCCTGCCTCACTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTCCGATCG < 2:1141848/90‑1 GCCTGCCTCACTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTCCGATCGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTA > 1:1466726/1‑90 GAAAAAATGTGTAAAACACATTAACCGTCCGATCGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGCAGTCCTTG < 2:1466726/90‑1 GTCCGATCGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGCAGTCCTTGATATTTAT > 1:2346568/1‑72 GTCCGATCGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGCAGTCCTTGATATTTAT < 2:2346568/72‑1 CGATCGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGCAGTCCTTGATATTTATGATGCATTGCATACCGTGGGT < 2:1467176/90‑1 CGATCGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGCAGTCCTTGATATTTATGATGCATTGCATACCGTGGGT < 2:1580706/90‑1 GATCGCTTTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGCAGTCCTTGATATTTATGATGCATTGCATACCGTGGGT < 1:1141848/90‑1 GATCGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGCAGTCCTTGATATTTATGATGCATTGCATACCGTGGGTG < 1:2116450/90‑1 ATCGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGC < 1:1997642/51‑1 ATCGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGC > 2:1997642/1‑51 TCGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGCAGTCCTTGATATTTATGATGCATTGCATACCGTGGGTGGT > 1:768035/1‑90 GCGATCGGACGACCATCTCGGCTCCAGACAACATCTCCATGGCCTGCCTCACTGTTTGACGGAAAAAATGTGTAAAACACATTAACCGTCCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/82156‑82062‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtccgatcGC‑TTATCGATCAGGGCGTTAAACAAGTATTCGGTTATCCCGGAGGCGCAGTCCTTGATATTTATGATGCATTGCATACCGTGGGTGGT > NZ_CP009273/82155‑82242 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |