| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3707970 | 83 (1.060) | 4 (0.060) | 3/142 | 4.7 | 5.1% | coding (1785/2334 nt) | bisC | biotin sulfoxide reductase |
| ? | NZ_CP009273 | = 3707984 | 75 (1.080) | coding (1771/2334 nt) | bisC | biotin sulfoxide reductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCCGGCTCCAGCCACATTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCATCTCAATTA > NZ_CP009273/3707881‑3708058 | tCCGGCTCCAGCCACATTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCg < 2:1582466/90‑1 (MQ=255) cGGCTCCAGCCACATTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGt > 2:1940599/1‑90 (MQ=255) cGGCTCCAGCCACATTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGt > 2:2067201/1‑90 (MQ=255) acaTTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCTCTGGCGGTTTTTAACGGAt < 2:1641197/90‑1 (MQ=255) acaTTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGAt < 1:668904/90‑1 (MQ=255) acaTTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGAt < 1:2241143/90‑1 (MQ=255) caTTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATg > 2:1892496/1‑90 (MQ=255) caTTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATg > 1:2188964/1‑90 (MQ=255) tgacgATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATgc > 1:1556460/5‑90 (MQ=255) aTTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATgc > 2:99899/1‑90 (MQ=255) aTTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATgc < 1:1135230/90‑1 (MQ=255) aTTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATga < 2:2046334/90‑2 (MQ=255) ggATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGcc > 2:718638/1‑90 (MQ=255) aTGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCgg < 1:992648/71‑1 (MQ=255) aTGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCgg > 2:992648/1‑71 (MQ=255) aGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATc < 2:198089/90‑1 (MQ=255) gCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATcgcg > 1:560349/1‑90 (MQ=255) aTCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTaa < 1:534145/66‑1 (MQ=255) aTCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTaa > 2:534145/1‑66 (MQ=255) aTCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTTAAGGATGCGCCAGCGGGTCGCGGCa > 1:2369713/1‑90 (MQ=255) aTCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGGGCCAACGGATCGGGGCa > 2:92152/1‑90 (MQ=255) aTCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGGTCGCGGCa > 2:2471983/1‑90 (MQ=255) aTCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCa > 2:2093570/1‑90 (MQ=255) aTCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCa > 1:1674896/1‑90 (MQ=255) cGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCaaaa < 2:1566563/90‑1 (MQ=255) ggTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAAt > 1:2397694/1‑90 (MQ=255) atccGTAATCGGCAATACGCCGTGAGAAGATTTCAATAATGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCag < 1:92152/88‑1 (MQ=255) ccGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCagcg > 2:1482182/1‑90 (MQ=255) gTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCagcgaa < 2:450516/90‑1 (MQ=255) gTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCagcgaa < 1:99899/90‑1 (MQ=255) gTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGACAGCGGATCGCGGCAAAAATCagcgaa < 1:58526/90‑1 (MQ=255) tAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCagcgaag > 2:2464060/1‑90 (MQ=255) aaTCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAAAGGAGGCGCCAGCGGGTCGCGGCCAAAAAAaacgaagc > 1:543621/1‑90 (MQ=255) cAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAaaaa > 2:1360598/1‑90 (MQ=255) aTACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTaa > 1:1063816/1‑44 (MQ=255) aTACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTaa < 2:1063816/44‑1 (MQ=255) aTACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAAc > 2:1980020/1‑90 (MQ=255) aTACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAAc > 2:84090/1‑90 (MQ=255) cTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctc > 2:1383952/1‑90 (MQ=255) cTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctc > 2:496415/1‑90 (MQ=255) cTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctc < 2:591318/90‑1 (MQ=255) tgtgAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAAAcgctcg > 1:709527/1‑90 (MQ=255) gtgAGAAGATTTCAATCTTGCCGCTGTCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctcgc > 2:772800/1‑90 (MQ=255) gtgAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACgg < 2:172880/40‑1 (MQ=255) gtgAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACgg > 1:172880/1‑40 (MQ=255) gtgAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctcgc < 2:308737/90‑1 (MQ=255) gtgAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctcgc > 2:808992/1‑90 (MQ=255) gtgAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctcgc < 2:1674896/90‑1 (MQ=255) gtgAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctcgc > 2:1705486/1‑90 (MQ=255) gtgAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctcgc > 1:199439/1‑90 (MQ=255) gtgAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgc > 2:392798/1‑86 (MQ=255) gtgAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgc < 1:392798/86‑1 (MQ=255) gtgAGAAGATTTCAATCTTGACGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGAAAAAATCAGCGAAGCGAATAAACcgctcgc > 2:1648951/1‑90 (MQ=255) tgAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGAAGCGCCAGCGGATCGCGGC‑AAAATCAGCGAAGCGAATAAACCGCTCGCTg > 2:1081190/1‑90 (MQ=255) gaagaTTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTc > 1:1636201/1‑90 (MQ=255) agaTTTCAATCTTGCCGCTGTCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctc > 1:574008/1‑82 (MQ=255) agaTTTCAATCTTGCCGCTGTCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctc < 2:574008/82‑1 (MQ=255) aTTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCagcgaa > 2:125926/1‑65 (MQ=255) aTTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCagcgaa < 1:125926/65‑1 (MQ=255) aTTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCggg > 1:2339999/1‑90 (MQ=255) aTTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCggg > 1:812401/1‑90 (MQ=255) ttCAATCTTGGCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGtt > 2:1332836/1‑90 (MQ=255) ttCAATCTTGCCTCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGtt > 2:2296260/1‑90 (MQ=255) ttCAATCTTGCCGCTGGCGGTTTTTAACTGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctc < 2:1910544/78‑1 (MQ=255) ttCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACcgctc > 1:1910544/1‑78 (MQ=255) ttCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGtt > 2:384203/1‑90 (MQ=255) ttCAATCTTGCCGCTGGCGGTTTTTAAAGGATGCGCCAGCGGATCGCGGGAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGtt > 1:165373/1‑90 (MQ=255) aTCTTGCCGCTGGCGGTTTTTAACGGATGCGCCACCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTcc > 2:1141024/1‑90 (MQ=255) tCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCg < 2:579916/90‑1 (MQ=255) ttGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGGGAAGGGAATAAACCCCCCGCTGTCCGGGTTTTCCGGc > 2:400569/1‑90 (MQ=255) tGCCGCTGGCGGTTTTTAACGGATGCTCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATaa > 2:1100467/1‑63 (MQ=255) tGCCGCTGGCGGTTTTTAACGGATGCTCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATaa < 1:1100467/63‑1 (MQ=255) tGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCa > 1:2104871/1‑90 (MQ=255) gCCGCTGTCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCAt < 1:772800/90‑1 (MQ=255) gCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCAt < 1:2278171/90‑1 (MQ=255) gCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCAt < 1:496415/90‑1 (MQ=255) gCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCAt < 1:2464060/90‑1 (MQ=255) ccGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCAtc < 1:808992/90‑1 (MQ=255) ccGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCAtc < 1:1482182/90‑1 (MQ=255) tGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCATCTCaa > 1:77169/1‑90 (MQ=255) tGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGAAAAAATCAGCGAAGCGAATaaa > 1:1615334/1‑58 (MQ=255) tGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGAAAAAATCAGCGAAGCGAATaaa < 2:1615334/58‑1 (MQ=255) cGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCATCTCAATTa < 2:560349/90‑1 (MQ=255) cGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCATCTCAATTa < 2:1085804/90‑1 (MQ=255) | TCCGGCTCCAGCCACATTGGATGCCCAGGGCAATCCGGGTAACCGTAATCGGCAATACGCTGTGAGAAGATTTCAATCTTGCCGCTGGCGGTTTTTAACGGATGCGCCAGCGGATCGCGGCAAAAATCAGCGAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCATCTCAATTA > NZ_CP009273/3707881‑3708058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |