Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092734,594,1610CT42.1% 121.5 / 68.5 107S62F (TCT→TTT) bglJDNA‑binding transcriptional activator BglJ
Reads supporting (aligned to +/- strand):  ref base C (9/53);  new base T (45/0);  total (54/53)
Fisher's exact test for biased strand distribution p-value = 1.90e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 124 total aligned reads displayed.

CCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTT  >  NZ_CP009273/4594078‑4594249
                                                                                   |                                                                                         
cccTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttctttttc                                                                                     <  1:1249031/90‑1 (MQ=255)
cccTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttctttttc                                                                                     <  2:1894095/90‑1 (MQ=255)
  cTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTg                                                                                   <  1:35024/90‑1 (MQ=255)
  cTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTg                                                                                   <  1:74204/90‑1 (MQ=255)
  cTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTg                                                                                   <  1:445040/90‑1 (MQ=255)
    tataAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGcc                                                                                 <  1:883190/90‑1 (MQ=255)
          cTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCCTgag‑a                                                                          >  1:1664996/1‑90 (MQ=255)
          cTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCATTTTTTTTTTTTTTGTCATgag‑a                                                                          >  1:360893/1‑90 (MQ=255)
          cTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGAGGTCATTTTTTCTTTTTCTg                                                                                   >  2:338814/1‑82 (MQ=255)
          cTCCATACCTATACAAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCATgag‑a                                                                          >  2:421938/1‑90 (MQ=255)
           tCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCATTTTTTTTTTTTTTTCCATgagga                                                                          >  1:1408995/1‑88 (MQ=255)
            ccATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTTCCATGAG‑AAg                                                                        >  1:297122/1‑90 (MQ=255)
             cATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTTCCCTGAG‑AAga                                                                       >  1:2349541/1‑89 (MQ=255)
              aTACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTg                                                                      <  1:1123003/90‑1 (MQ=255)
              aTACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTg                                                                      <  1:1542307/90‑1 (MQ=255)
              aTACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTg                                                                      <  1:756249/90‑1 (MQ=255)
              aTACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCATTTTTTTTTTTTTTTCCCTGGG‑GAGTg                                                                      >  1:2475323/1‑90 (MQ=255)
              aTACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCATTTTTTTTTTTTTTTCCATgag‑gaggg                                                                      >  1:1243886/1‑88 (MQ=255)
               agccTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGa                                                                     <  1:758527/88‑1 (MQ=255)
                   tataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCAttttttttttttt                                                                                     >  2:2055371/1‑70 (MQ=255)
                   tataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttctttttc                                                                                     <  1:2055371/71‑1 (MQ=255)
                    ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTTTGCCATGAG‑AAGGGAGCGCa                                                                >  1:949328/1‑90 (MQ=255)
                    ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTg                                                                                   >  1:2144706/1‑72 (MQ=255)
                    ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCCTGAG‑AAGGGAgggcc                                                                >  2:1179535/1‑89 (MQ=255)
                    ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTg                                                                                   <  2:2144706/72‑1 (MQ=255)
                      aCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTg                                                                                   >  1:555222/1‑70 (MQ=255)
                      aCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCaga                                                              <  2:1474337/90‑1 (MQ=255)
                      aCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCaga                                                              <  1:2384602/90‑1 (MQ=255)
                       ccAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCagag                                                             <  1:28765/90‑1 (MQ=255)
                       ccAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCagag                                                             <  2:181470/90‑1 (MQ=255)
                       ccAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCagag                                                             <  1:1955586/90‑1 (MQ=255)
                       ccAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCagag                                                             <  1:1824044/90‑1 (MQ=255)
                        cAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCagaga                                                            <  1:1191821/90‑1 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCTGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCagagag                                                           >  2:2322995/1‑90 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCTTTTTTTTTTTTTTTTCCATGAG‑AAGTGAGCGCcgagag                                                           >  1:2220174/1‑90 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCAttttttttttttt                                                                                     >  1:51312/1‑64 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCAttttttttttttt                                                                                     >  2:641445/1‑64 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttctttttc                                                                                     <  2:51312/65‑1 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttctttttc                                                                                     <  2:659390/65‑1 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttctttttc                                                                                     <  1:641445/65‑1 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTTCCCTGAG‑AAGGGAGGGCagagag                                                           >  2:2205746/1‑90 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTTCCATGAG‑AAGTGAGGGCagagag                                                           >  2:28765/1‑90 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCATGAG‑AAGTGAGGGCagggag                                                           >  2:2384602/1‑90 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCATGAG‑AAGGGGGCGCagagag                                                           >  2:1035847/1‑90 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCAttttttttttttt                                                                                     >  1:659390/1‑64 (MQ=255)
                         aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCATTTTTTTTTTTTTTTCCCTGAG‑AAGGGAGCGCagaggg                                                           >  1:2070146/1‑88 (MQ=255)
                           tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTTCCCTGAG‑AATAGAGGGCAGAGAggg                                                         >  1:1475138/1‑90 (MQ=255)
                           tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTTCCATGAG‑GAGGGAGCGCagggaggg                                                         >  1:1386447/1‑90 (MQ=255)
                           tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTTCCATGAG‑AAGTGAGGGCagagagct                                                         >  2:758527/1‑88 (MQ=255)
                           tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTg                                                                                   <  1:71593/65‑1 (MQ=255)
                           tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTg                                                                                   >  2:71593/1‑65 (MQ=255)
                           tCAGGAGTCATTTCAGCATGCCATGTCGCGGATCTCGTTTGCGGCGGTCAttttttttttttt                                                                                     >  1:165453/1‑62 (MQ=255)
                           tCAGGAGTCATTTCAGCATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttctttttc                                                                                     <  2:165453/63‑1 (MQ=255)
                            cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCTGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGa                                                        <  1:2322995/90‑1 (MQ=255)
                            cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttct                                                                                          <  2:1585947/57‑1 (MQ=255)
                            cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTTCCCTGAG‑AAGTGAGGGCAGAGAgggg                                                        >  2:919098/1‑89 (MQ=255)
                            cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGa                                                        <  1:886835/90‑1 (MQ=255)
                              ggAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCTTTTTTTTTTTTTTTTCCCTGAG‑AAGTGAGCGCAGAGAGGGGtt                                                      >  2:367295/1‑90 (MQ=255)
                               gAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGGGAGCGCAGAGGGGGGTTa                                                     >  2:2492252/1‑90 (MQ=255)
                                aGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTAt                                                    <  1:2384865/90‑1 (MQ=255)
                                  tCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCt                                                  <  2:1985999/90‑1 (MQ=255)
                                   cATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTGCTTTTTTTTTTTTTTTCCCTGAG‑AAGTGAGCGCAGGGGGGGGTTAtttt                                                 >  1:2368462/1‑90 (MQ=255)
                                    aTTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGAGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTg                                                >  2:344911/1‑90 (MQ=255)
                                        cAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCATTAG‑AAGGGGGGGCGGGGGGGGGTTATTTTTCctt                                            >  2:2202489/1‑89 (MQ=255)
                                        cAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCctg                                            <  2:666010/90‑1 (MQ=255)
                                          ggATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCctgac                                          <  1:2202489/90‑1 (MQ=255)
                                          ggATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCctgac                                          <  2:2368462/90‑1 (MQ=255)
                                             tGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCATGAG‑AAGGGGGCGCAGAGAGGGGTTTTTTTTGctgactga                                       >  2:1590183/1‑90 (MQ=255)
                                             tGCCATGTCGAGGATCTCGTTTGCGGCGGGCATTTTTTTTTTTTTTGCCATGAG‑AAGGGAGCGCAGAGGGGGGTTTTCTTTCctgactga                                       >  1:328938/1‑90 (MQ=255)
                                              gCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTTCCATGAG‑AAGTGAGGGCAGAGAGGGGTTATCTTTCCTGACTGaa                                      >  2:1843030/1‑90 (MQ=255)
                                               ccATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTTCCCTGGG‑AAGGGAGGGGAGGGAGGGGTTTTCTTTCCTGACTGAAc                                     >  1:977999/1‑90 (MQ=255)
                                                cATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACt                                    <  2:1495966/90‑1 (MQ=255)
                                                cATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACt                                    <  2:752651/90‑1 (MQ=255)
                                                cATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACt                                    <  1:385071/90‑1 (MQ=255)
                                                cATGTCGCGGATCTCGTTTGCGGCGGCCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACt                                    <  1:1428840/90‑1 (MQ=255)
                                                 aTGTCGCGGATCTCGTTTGCGGCGGACATTTTTTTTTTTTCTCTCCTCCG‑AAGGGAGCGGAAAAAGGGGGTATCTTTCCTGACTGAAATg                                   >  2:748719/1‑90 (MQ=255)
                                                    tCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTCTGCCCTGAG‑AAGTGAGGGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCg                                >  2:912171/1‑90 (MQ=255)
                                                      gcgGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTTCCCTGAG‑AAGGGAGCGGCGAGGGGGGTTATTTTTCCTGACTGGACTGGCGAt                              >  1:1212007/1‑90 (MQ=255)
                                                      gcgGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGAt                              <  1:1179535/90‑1 (MQ=255)
                                                        ggATCTCGTTTGCGGCGGTTGTTTTTTCTTTTTCTGGCATGGGAAAGTG‑GGGCGCGGGGGGGTTTTTTTTCCTGACTGAACTGGGGCTTa                            >  2:522830/1‑90 (MQ=255)
                                                        ggATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTa                            <  1:367295/90‑1 (MQ=255)
                                                        ggATCTAGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGGGGGGGGTTTTCTTGCCTGACTGAACTGGCGATTa                            >  1:812587/1‑90 (MQ=255)
                                                           tctcGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGt                         >  2:596894/1‑90 (MQ=255)
                                                            ctcGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTTCCTGACTGAACTGGCGATTAAGtt                        <  2:1564576/90‑1 (MQ=255)
                                                               gTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTcc                     <  1:2205746/90‑1 (MQ=255)
                                                               gTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTcc                     <  2:2183048/90‑1 (MQ=255)
                                                                tttGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCcg                    <  2:1478063/90‑1 (MQ=255)
                                                                   gcggcgGTCATTTTTTTTTTTTTTGCCCTGAG‑AAGGGAGCGCAGAGAGGGAGTTTTTTTCCGGACTTAACTGGGGGTTTAGGTTTCGCGt                 >  2:344975/1‑90 (MQ=255)
                                                                   gcggcgGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGt                 <  2:2349541/90‑1 (MQ=255)
                                                                   gcggcgGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGt                 <  2:154726/90‑1 (MQ=255)
                                                                      gcggTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAcc              <  1:2021446/90‑1 (MQ=255)
                                                                       cggTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCTCGTAccc             <  2:949328/90‑1 (MQ=255)
                                                                       cggTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAccc             <  1:1339833/90‑1 (MQ=255)
                                                                        ggTCATTTTTTTTTTTTTTGCCATGAG‑GAGGGAGCGCAGAGGGGGATTATCTTGCCTGGCTGAACTTGCGATTAAGTTTTCGCGTACCCg            >  1:1580744/1‑90 (MQ=255)
                                                                        ggTCATTTTTTTTTTTTCTGCCATGAG‑GAGGGAGCGCAGGGGGGGGGTATCTTTCCTGACTGGACCGGGGATTAAGGTTTCGCGTTCCCg            >  1:101762/1‑90 (MQ=255)
                                                                        ggTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCagaga                                                            <  2:2072631/42‑1 (MQ=255)
                                                                         gTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCgg           <  2:2111731/90‑1 (MQ=255)
                                                                            aTTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGt        <  2:1220649/90‑1 (MQ=255)
                                                                             ttttttCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGtt       <  1:435248/90‑1 (MQ=255)
                                                                                 ttctttttctGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGt   <  2:963011/90‑1 (MQ=255)
                                                                                   |                                                                                         
CCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAG‑AAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTT  >  NZ_CP009273/4594078‑4594249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑