| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1340634 = | 16 (0.770) | 4 (0.210) | 3/154 | 1.7 | 24.4% | coding (366/1986 nt) | pdeR | cyclic di‑GMP phosphodiesterase |
| ? | NZ_CP009273 | 1340740 = | 10 (0.520) | coding (260/1986 nt) | pdeR | cyclic di‑GMP phosphodiesterase | |||||
TGACGTCGTGTTCTTTCAACCCTGTGTAATCTTCACATAACCGATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGCTCAGCAAAGGAAAGCCCGTGTGATAAATCACGAGCAACCGCCGGTGTGTCA > NZ_CP009273/1340546‑1340709 | tGACGTCGTGTTCTTTCAACCCTGTGTAATCTTCACATAACCGATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCgg > 1:58299/1‑90 (MQ=255) tcatcacctccagcctgatgatgagtctgaccgtcgatgaaagcgatctttctgtgcatctggtaggacgaaaaatcaataaacgGGAAt > 1:37529‑M1/86‑90 (MQ=255) gtcgtGTTCTTTCAACCCTGTGTAATCTTCACATAACCGATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAAtg > 1:13659/1‑90 (MQ=255) ccagcctgatgatgagtctgaccgtcgatgaaagcgatctttctgtgcatctggtaggacgaaaaatcaataaacgGGAATGTGCTTCAg < 2:349969‑M1/14‑1 (MQ=255) ccagcctgatgatgagtctgaccgtcgatgaaagcgatctttctgtgcatctggtaggacgaaaaatcaataaacgGGAATGTGCTTCAg < 2:200243‑M1/14‑1 (MQ=255) cTGTGTAATCTTCACATAACCGATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCt > 2:596475/1‑90 (MQ=255) tgtgTAATCTTCACATAACCGATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTg > 2:21177/1‑90 (MQ=255) gtgtAATCTTCACATAACCGATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGc > 1:572486/1‑90 (MQ=255) gtgtAATCTTCACATAACCGATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGc < 1:79443/90‑1 (MQ=255) gtAATCTTCACATAACCGATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGCTc < 1:21177/90‑1 (MQ=255) tctgaccgtcgatgaaagcgatctttctgtgcatctggtaggacgaaaaatcaataaacgGGAATGTGCTTCAGAAACTACCTGCTCAGc > 1:349969‑M1/61‑90 (MQ=255) tCTTCACATAACCGATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGCTCAGCa < 1:596475/90‑1 (MQ=255) ctgaccgtcgatgaaagcgatctttctgtgcatctggtaggacgaaaaatcaataaacgGGAATGTGCTTCAGAAACTACCTGCTCAGCa > 1:200243‑M1/60‑90 (MQ=255) cacaTAACCGATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGCTCAGCAAAgg > 2:232993/1‑90 (MQ=255) aaCCGATTGAAGCGTTGGATATTGCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGCTCAGCAAAGGAAAGc > 2:284392/1‑90 (MQ=255) gATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGCTCAGCAAAGGAAAGCCCgt > 2:248799/1‑90 (MQ=255) gATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGCTCAGCAAAGGAAAGCCCgt > 1:75055/1‑90 (MQ=255) cccccGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGCTCAGCAAAGGAAAGCCCGTGTGATAAATCACGAGCAAc > 1:98052/1‑90 (MQ=255) ccGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGCTCAGCAAAGGAAAGCCCGTGTGATAAATCACGAGCAAccgc > 1:389988/1‑90 (MQ=255) gTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGCTCAGCAAAGGAAAGCCCGTGTGATAAATCACGAGCAACCGCCGgtgt > 2:421795/1‑90 (MQ=255) agaATCACTATTGCGAAATGTGCTTCAAAACCTCCCGGCTCAGCAAAGAAAAGCCCGTGTGATAAATCACGAGAAACCGCCGGTGTGTca < 2:65024/90‑1 (MQ=255) | TGACGTCGTGTTCTTTCAACCCTGTGTAATCTTCACATAACCGATTGAAGCGTTGGATATTCCCCCGGCTGTCGAGAATCACTATTGCGGAATGTGCTTCAGAAACTACCTGCTCAGCAAAGGAAAGCCCGTGTGATAAATCACGAGCAACCGCCGGTGTGTCA > NZ_CP009273/1340546‑1340709 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |