New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 2282398 = | NA (NA) | 40 (1.930) | 21/166 | 0.1 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
? | NZ_CP009273 | = 3629062 | 0 (0.000) | coding (862/1053 nt) | yhiM | DUF2776 domain‑containing protein |
TTCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACAT > NZ_CP009273/3628976‑3629150 | ttCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGgga > 2:309657‑M2/1‑87 (MQ=255) tATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt < 1:498486‑M2/90‑8 (MQ=255) ttGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcg < 2:104902‑M2/90‑11 (MQ=255) ggAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagc > 2:398860‑M2/1‑73 (MQ=255) gTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattc < 1:313276‑M2/90‑28 (MQ=255) ttACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattct < 1:202867‑M2/90‑29 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc < 2:495589‑M2/90‑36 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc < 2:66372‑M2/90‑36 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc > 1:66372‑M2/1‑55 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 1:26561‑M2/90‑38 (MQ=255) tcAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactc > 2:307903‑M2/1‑49 (MQ=255) tcAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactc < 2:237370‑M2/90‑42 (MQ=255) cTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt < 1:101116‑M2/90‑50 (MQ=255) cTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt < 2:300693‑M2/90‑50 (MQ=255) cACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcat > 2:51313‑M2/1‑30 (MQ=255) ggAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttttagcc < 2:371813‑M2/90‑70 (MQ=255) gagaCGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg > 2:564523‑M2/1‑20 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:606950‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:554770‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:447393‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:541126‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:197207‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:380978‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:524151‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:352412‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:339021‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc > 1:345353‑M2/1‑16 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 2:345353‑M2/74‑59 (MQ=255) ccTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc > 1:197207‑M2/1‑12 (MQ=255) tGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc < 1:604734‑M2/90‑81 (MQ=255) tGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcaagtttgagccgattttttctc < 1:327681‑M2/90‑81 (MQ=255) gTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc < 1:105958‑M2/90‑82 (MQ=255) ttCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc < 2:582448‑M2/90‑83 (MQ=255) ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccggttttttctcccgtaa > 1:81106‑M2/1‑4 (MQ=255) ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa > 1:66232‑M2/1‑4 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:247111‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:152094‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 1:240521‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:78282‑M2/1‑3 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:361630‑M2/1‑2 (MQ=255) | TTCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACAT > NZ_CP009273/3628976‑3629150 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |