Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1362908	1362916	9	3 [1]	[0] 2	pspA	phage shock protein PspA

GCAATGGCTCGTTTCGAATCTTTCGAACGTCGTATTGACCAGATGGAAGCGGAAGCAGAAAGCCACAGCTTCGGTAAACAAAAATCGCTG  >  NZ_CP009273/1362825‑1362914                                                                                   |        gCAATGGCTCGTTTCGAATCTTTCGAACGTCGTATTGACCAGATGGAAGCGGAAGCAGAAAGCCACAGCTTCGGTAAACAAAAATCGCTg  <  2:342433/90‑1 (MQ=255)  cAATGGCTCGTTTCGAATCTTTCGAACGTCGTATTGACCAGATGGAAGCGGAAGCAGAAAGCCACAGCTTCGGTAAACaaaa         <  1:348945/82‑1 (MQ=255)  cAATGGCTCGTTTCGAATCTTTCGAACGTCGTATTGACCAGATGGAAGCGGAAGCAGAAAGCCACAGCTTCGGTAAACaaaa         >  2:348945/1‑82 (MQ=255)                                                                                   |        GCAATGGCTCGTTTCGAATCTTTCGAACGTCGTATTGACCAGATGGAAGCGGAAGCAGAAAGCCACAGCTTCGGTAAACAAAAATCGCTG  >  NZ_CP009273/1362825‑1362914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑