| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 899,438 | 0 | A | C | 57.1% | 4.4 / 11.2 | 14 | G162G (GGT→GGG) | ybjP | lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (5/1); new base C (0/8); total (5/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.00e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCAT > NZ_CP009273/899352‑899523 | cGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATCGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTAccc > 1:392673/1‑90 (MQ=255) tttCCTCACAAAAGGCGGGAAAATTTACGGGTTTTATTGGTTGATAAAGGCGTAAGCGATTCTCGATGGACTGACGGAGCGTCCccgccg < 1:487895/89‑1 (MQ=255) gcgggACATTTTGGGGGTTTTTTTGGTTGATAAGGGGGTTAGCGTTTCGGGGGGGACGGGGGGAGCGTCCCCGCCGTGGCATGAACGCTa < 2:202385/87‑1 (MQ=255) gCCGGACATTTTGGGGGTTTTTTTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGAGGGAGCGTCCCCGCCGTGGCATGAACGCTa < 1:580856/90‑1 (MQ=255) gCCGGACAATTTAGGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTCCCCGCCGTGGCATGAACGCTa < 1:160409/90‑1 (MQ=255) tttATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGcaca > 2:326614/1‑90 (MQ=255) tGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATg > 2:275083/1‑90 (MQ=255) tGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATg > 2:81359/1‑90 (MQ=255) cagggCGTTAGCGATTCCCGAGGGCCTGACGGGGCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGAccc < 1:565786/87‑1 (MQ=255) cAAGGCTTTAGCGTTTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGAccc < 1:146731/90‑1 (MQ=255) cgcGATGGTCGGAGGGGGGGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTg < 1:326614/88‑1 (MQ=255) cccGATGGACGGACGGACCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTg < 2:481170/88‑1 (MQ=255) cGATGGACTGACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGaa < 1:507771/90‑1 (MQ=255) gCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCAt > 2:36359/1‑90 (MQ=255) | CGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCAT > NZ_CP009273/899352‑899523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |