New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 3610600 =98 (1.520)4 (0.070) 4/150 3.2 4.5% coding (226/765 nt) nikD nickel import ATP‑binding protein NikD
?NZ_CP009273 3610644 = 81 (1.390)coding (270/765 nt) nikD nickel import ATP‑binding protein NikD
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 101 total aligned reads displayed.

GCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAC  >  NZ_CP009273/3610511‑3610688
                                                                                         |                                                                                        
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  2:1011541/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  2:1601475/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  2:1745919/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  2:1779366/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  2:1532103/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  2:1452967/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  1:543239/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  1:1623499/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          <  1:622585/90‑1 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  2:1367506/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          <  2:1289636/90‑1 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  1:1197307/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  1:993016/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  2:893425/1‑90 (MQ=255)
gcgcCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGAAGGCAAACCGGTTTCGCCTTGCGccc                                                                                          >  2:350181/1‑90 (MQ=255)
     gcAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTgcgc                                                                                     >  2:1444625/1‑90 (MQ=255)
     gcAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTgcgc                                                                                     >  1:1700527/1‑90 (MQ=255)
     gcAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTgcgc                                                                                     <  2:1512919/90‑1 (MQ=255)
         cGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCa                                                                                 <  1:893425/90‑1 (MQ=255)
            tGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCa                                                                              <  1:1448247/90‑1 (MQ=255)
             gggCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCaa                                                                             >  2:337651/1‑90 (MQ=255)
             gggCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCaa                                                                             >  2:324124/1‑90 (MQ=255)
             gggCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCaa                                                                             >  2:866884/1‑90 (MQ=255)
                  ttttGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGcgcg                                                                                    >  1:768473/1‑78 (MQ=255)
                  ttttGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGcgcg                                                                                    <  2:768473/78‑1 (MQ=255)
                    ttGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGcc                                                                      <  2:1038/90‑1 (MQ=255)
                    ttGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGcc                                                                      <  1:1743485/90‑1 (MQ=255)
                    ttGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGcc                                                                      <  2:306655/90‑1 (MQ=255)
                    ttGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGcc                                                                      <  2:360635/90‑1 (MQ=255)
                    ttGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGcc                                                                      <  2:1550205/90‑1 (MQ=255)
                      gCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGccac                                                                    <  1:111151/90‑1 (MQ=255)
                      gCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGccac                                                                    <  1:1504418/90‑1 (MQ=255)
                      gCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGccac                                                                    <  2:380148/90‑1 (MQ=255)
                       cccGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTgcgc                                                                                     >  1:705685/1‑72 (MQ=255)
                       cccGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTgcgc                                                                                     <  2:705685/72‑1 (MQ=255)
                       cccGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGccacc                                                                   >  2:1085886/1‑90 (MQ=255)
                       cccGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGccacc                                                                   >  1:443865/1‑90 (MQ=255)
                       cccGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGccacc                                                                   >  2:1131157/1‑90 (MQ=255)
                         cGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACcat                                                                 >  2:1543740/1‑90 (MQ=255)
                         cGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACcat                                                                 <  2:1913719/90‑1 (MQ=255)
                          gCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACcatc                                                                <  1:717474/90‑1 (MQ=255)
                          gCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACcatc                                                                <  2:525076/90‑1 (MQ=255)
                          gCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACcatc                                                                <  2:1317785/90‑1 (MQ=255)
                          gCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACcatc                                                                <  2:133938/90‑1 (MQ=255)
                          gCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACcatc                                                                >  1:1661825/1‑90 (MQ=255)
                          gCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCCCCTTGCGCCCTGCGCGGCATCAAAATTGCCACcatc                                                                <  2:1802739/90‑1 (MQ=255)
                               cGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCa                                                           <  2:962763/90‑1 (MQ=255)
                               cGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCa                                                           <  2:1068939/90‑1 (MQ=255)
                                 ttCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGa                                                         <  1:144250/90‑1 (MQ=255)
                                          cggcggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCa                                                >  2:885282/1‑90 (MQ=255)
                                            gcggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGTCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgc                                              <  1:503296/90‑1 (MQ=255)
                                            gcggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgc                                              <  1:1085886/90‑1 (MQ=255)
                                            gcggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgc                                              <  2:118708/90‑1 (MQ=255)
                                            gcggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgc                                              <  1:1779366/90‑1 (MQ=255)
                                             cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg                                             <  2:596886/90‑1 (MQ=255)
                                             cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg                                             <  2:443004/90‑1 (MQ=255)
                                             cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg                                             <  1:1601475/90‑1 (MQ=255)
                                             cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg                                             >  2:802441/1‑90 (MQ=255)
                                             cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg                                             <  1:1653345/90‑1 (MQ=255)
                                             cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg                                             <  2:1838978/90‑1 (MQ=255)
                                             cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg                                             <  1:1745919/90‑1 (MQ=255)
                                                  gAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCttt                                        <  2:276182/90‑1 (MQ=255)
                                                  gAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCttt                                        <  2:1661825/90‑1 (MQ=255)
                                                    aaTTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTaa                                      <  2:1549248/90‑1 (MQ=255)
                                                    aaTTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTaa                                      <  1:42691/90‑1 (MQ=255)
                                                    aaTTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTaa                                      <  1:672604/90‑1 (MQ=255)
                                                      ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc                                    <  1:872834/90‑1 (MQ=255)
                                                      ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc                                    <  1:779462/90‑1 (MQ=255)
                                                      ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc                                    <  1:718314/90‑1 (MQ=255)
                                                      ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc                                    <  1:1897301/90‑1 (MQ=255)
                                                      ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc                                    <  2:1481076/90‑1 (MQ=255)
                                                      ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc                                    <  1:1444625/90‑1 (MQ=255)
                                                       tttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATcc                                   <  2:122370/90‑1 (MQ=255)
                                                       tttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATcc                                   <  2:1796816/90‑1 (MQ=255)
                                                       tctAGCCAAGGGCAAAAGGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATcc                                   <  2:1501023/88‑1 (MQ=255)
                                                         tAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCAc                                 <  2:1134053/90‑1 (MQ=255)
                                                         tAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCAc                                 <  1:1452967/90‑1 (MQ=255)
                                                          aGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACt                                <  1:337651/90‑1 (MQ=255)
                                                           gCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTg                               <  2:1649751/90‑1 (MQ=255)
                                                              gATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGcac                            <  1:163862/90‑1 (MQ=255)
                                                               aTGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGcaca                           >  1:60843/1‑90 (MQ=255)
                                                               aTGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGcaca                           <  1:724009/90‑1 (MQ=255)
                                                                tGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac                          >  2:1432745/1‑90 (MQ=255)
                                                                tGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac                          <  1:240242/90‑1 (MQ=255)
                                                                tGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac                          <  1:1347101/90‑1 (MQ=255)
                                                                tGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac                          <  1:475863/90‑1 (MQ=255)
                                                                tGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac                          <  1:1011541/90‑1 (MQ=255)
                                                                  gCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCa                        <  1:1076667/90‑1 (MQ=255)
                                                                     aaCCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGc                     >  2:872803/1‑90 (MQ=255)
                                                                     aaCCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGc                     >  2:651299/1‑90 (MQ=255)
                                                                       ccGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGcac                   <  1:151346/90‑1 (MQ=255)
                                                                          gTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac                          <  1:1853038/80‑1 (MQ=255)
                                                                          gTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac                          >  2:1853038/1‑80 (MQ=255)
                                                                             tCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCAc             <  2:1026436/90‑1 (MQ=255)
                                                                               gCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCAcgc           <  1:1532103/90‑1 (MQ=255)
                                                                                      gcCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGaa    <  2:1023217/90‑1 (MQ=255)
                                                                                        gcTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAc  >  2:1044378/2‑90 (MQ=255)
                                                                                        ccTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAc  <  1:140538/90‑1 (MQ=255)
                                                                                         cTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac                          <  1:1617154/65‑1 (MQ=255)
                                                                                         cTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac                          >  2:1617154/1‑65 (MQ=255)
                                                                                         |                                                                                        
GCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAC  >  NZ_CP009273/3610511‑3610688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.