| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 353,601 | 0 | C | A | 52.7% | 38.3 / 114.9 | 93 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| Reads supporting (aligned to +/- strand): ref base C (26/18); new base A (0/49); total (26/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.31e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-05 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATG > NZ_CP009273/353514‑353689 | aTTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGcaacaa > 1:501807/1‑90 (MQ=255) ccGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑cc > 1:845421/1‑90 (MQ=255) cccAACACCCGCGCATTTATCCACCGCCATGTGAAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTTTTTTT‑CCGCCGCAACAAAA‑‑ccgc < 1:17601/89‑1 (MQ=21) aacaccCGCGCTTTTACCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGt < 1:619684/90‑1 (MQ=25) cacccGCTCATTTACCCAACGCCATGTGAAAAAATGCTTC‑CGCGGCGGCTGTCTGCCAGTTATTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTtc < 1:1466106/87‑1 (MQ=21) cacccGCGTTTTTACCCACCCCCTTGTAAAAAAATCCCTC‑CGGGGCGGCTGTCTCCCAGTTTTTTTC‑CCGCCGAAAAAAAA‑‑CCGCCGTtc < 2:441168/87‑1 (MQ=255) cacccGCGCTTTTACCCACCCCCATGTGAAAAAATGCCTT‑CGGGGCGGCTGTCTGCCAGCTTTTTTC‑CCGCCGCAACAAAA‑‑CCGCCGTtc < 1:648616/87‑1 (MQ=21) cacccGCGCTTTTACCCACCCCCATGTGAAAAAATGCCTC‑CGCGGCGGCTGTCTGCCATCTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTtc < 2:632572/87‑1 (MQ=21) cacccGCGCTTTTACCCAACGCCTTGTGAAAAAATGCCTT‑CGGGGCGGCTGTCTGCCAGCTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTtc < 1:1111012/87‑1 (MQ=21) cacccGCGCTTTTACCCAACGCCATGTCAAAAAATCCCTT‑CGCGGGGGCTGTCCGCCATTTTTTTTC‑CCGCCACAAAAAAA‑‑CCGCCGTtc < 1:1558607/87‑1 (MQ=255) cacccGCGCTTTTACCCAACCCCATGTGAAAAAATGCCTT‑CGGGGCGGCTGTCTGCCAGTTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTtc < 1:1825503/87‑1 (MQ=21) cacccGCGCTTTTACCCAACCCCATGTGAAAAAATCCCTT‑CGGGGCGGCTGTCTGCCAGCTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTtc < 1:1646748/87‑1 (MQ=21) cacccGCGCTTTTACCCAACCCCATGTAAAAAAATGCCTT‑CGCGGCGGTTGTCTGCCAGTTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTtc < 1:1901411/87‑1 (MQ=21) cacccGCGCATTTATCCAACCCCATGTGAAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTtc < 1:670954/87‑1 (MQ=21) cacccGCGCATTTACCCACCCCCATGTGAAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTTTTTTC‑CCGCCGCAACAAAA‑‑CCGCCGTtc < 2:1838707/87‑1 (MQ=21) cacccGCCCTTTTACCCACCGCCATGTGAAAAAATGCTTT‑CGGGGCGGCTGTCTGCCAGCTTTTTTC‑CCGCCGCAACAAAA‑‑CCGCCGTtc < 1:1449038/87‑1 (MQ=21) cacccGCCCTTTTACCCACCCCCATGTGAAAAAATCCCTT‑CGCGGGGGCTGTCTGCCAGCTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTtc < 1:861768/87‑1 (MQ=16) caacCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGTCGTtc < 1:515256/90‑1 (MQ=255) aacccGCCCTTTTACCCACCCCCTTGTGAAAAAATGCCTC‑CGGGGCGGCTTTCTGCCAGCTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTtc < 1:1319661/87‑1 (MQ=255) gcgcATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTcc > 1:650415/1‑90 (MQ=255) gcgcATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTcc > 1:590093/1‑90 (MQ=255) gcgcATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTcc > 2:934847/1‑90 (MQ=255) gcgcATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTcc > 1:778937/1‑90 (MQ=255) gcgcATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTcc > 1:1499010/1‑90 (MQ=255) gcgcATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTcc > 2:1449059/1‑90 (MQ=255) gcATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCag > 2:1476446/1‑90 (MQ=255) tATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCagtctgt > 2:1155062/1‑86 (MQ=255) accaaaCGCCAGGTAAAAAAAGCCCTC‑CGCGGCGGCTGTCTGCCAG‑TTTTTTC‑CCGCCGCAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGc < 2:149555/86‑1 (MQ=255) tCCACCGCCATGTGCAAAAAGCCCTT‑GGGGGCGGGTGTCTGCCAGCTTTTTTT‑CCGCCGCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGc < 1:679930/90‑1 (MQ=37) tCCAACGCCATGTGAAAAATTGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTCCTCTCCAGTAGTGGc < 2:1855956/90‑1 (MQ=37) cccAACGCCATGTAAAAAAATCCCTC‑CGGGGGGGTTGTCTGCCAGTTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGc < 1:1208152/89‑1 (MQ=255) cccAACCCCTTGTAAAAAAATCCCTC‑CGGGGGGGTTTTCTGCCATTTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGc < 1:1043184/89‑1 (MQ=255) ccAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCg > 2:828642/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGcctgt > 1:243383/1‑86 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 1:1607800/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 1:933474/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 1:865044/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 2:347065/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 1:1728352/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 2:843046/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 2:961750/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 1:563545/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 1:253806/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 2:135234/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 2:1306875/1‑90 (MQ=255) gCCATGTAAAAAAATGCTTT‑CGGGGGGGCTGTCTGCCAGTTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCa < 1:1716116/90‑1 (MQ=255) cccATGTGAAAAAATGCCTT‑CGGGGCGGCTGTCTGCCAGCTTTTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCa < 1:454666/89‑1 (MQ=38) cccATGTAAAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGTTTTTTTC‑CCCCCGCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCa < 1:843046/89‑1 (MQ=25) aTGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGcccga > 1:978490/1‑86 (MQ=255) ttgtcAAAAACTCCTTCCGGGGGGGCTTTCTCCCAGTTTTTTTC‑CCCCCGCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAaga < 1:589341/86‑1 (MQ=255) aaaaaaCCCCTC‑CGCGGCGGCTGTCTGCC‑GTTTTTTTT‑CCCCCCAAAAAAAAC‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAAt < 2:1284765/89‑1 (MQ=255) aaaatTGCCTC‑CGGGGCGGTTGTCTGCCAGTTTTTTTC‑CCCCCGCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATa < 1:754145/90‑1 (MQ=255) aaaatTCCCTC‑CGCGGCGGCT‑TTTGCCCGGTTTTTTTCCCGCCCAAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATa < 2:972239/90‑1 (MQ=255) aaaagTCCCTC‑CGGGGGGCCTGTCTGCC‑GCTTTTTTTCCCCCCGAAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATa < 2:871208/90‑1 (MQ=255) aaaaaTGCCTT‑CGGGGCGGTTGTCTCCCAGCTTTTTTC‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATa < 1:106654/90‑1 (MQ=255) aaaaaTGCCTC‑CGCGGCGGCTGTCTGCCAGCTTTTTTC‑CCGCCGCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATa < 1:725994/90‑1 (MQ=38) aaaaaTCCCTC‑CGGGGCGGCTTCCCCCCATTTTTTTTC‑CCCCCGAAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATa < 2:393259/90‑1 (MQ=255) gCCTT‑CGCGGCGGCTGTCTGCCAGCTTTTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGc < 1:656778/69‑1 (MQ=255) gCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGc > 2:656778/1‑69 (MQ=255) cccTC‑CGCGGCGGC‑GTCCGCCCGTTTTTTTTCCCGCCAAAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTa < 2:979746/89‑1 (MQ=255) cTT‑CGGGGCGGCTGTCTGCCAGCTTTTTTC‑CCGCCGAAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAg < 1:321801/90‑1 (MQ=255) cTT‑CGCGGCGGCTTTCTGCCAGTTTTTTTC‑CCGCCGCAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAg < 1:20178/90‑1 (MQ=255) t‑CGGGGGGGTTGTCTGCCAGTTTTTTTC‑CCCCCGAAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGcc < 1:1382764/90‑1 (MQ=255) t‑CGGGGCGGCTTTCGCCCACTTATTTTC‑CCGCCCAAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGcc < 1:1258215/90‑1 (MQ=255) t‑CGCGGGGGCTGTCTGCCAGTTTTTTTC‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGcc < 1:135234/90‑1 (MQ=255) ggggggcggtTGTCTGCCGGTTTTTTTC‑CCGCCCAAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGcc < 2:1664683/86‑1 (MQ=255) cgggggcggtTGTCTGCCAGTTTTTTTC‑CCGCCCAAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGcc < 1:353380/86‑1 (MQ=255) ccggggcggcTGTCTGCCAGTTTTTTTC‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGcc < 1:230110/86‑1 (MQ=255) ccggggcggcTGTCTCCCAGTTTTTTTC‑CCCCCGCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGcc < 1:455955/86‑1 (MQ=255) ccgcgGCGCCTGCCCGCCATTTTTTTCC‑CCCCCACAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGcc < 2:1797524/89‑1 (MQ=255) gcggtTGTCTCCCATTTTTTTTC‑CCCCCCCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCa < 2:1028922/90‑1 (MQ=255) gttGTCTGCAAGTTTTTTTC‑CCCCCGAAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCTGTCAtgt < 1:1631694/88‑1 (MQ=255) gcTGTCGCCCAGTTTTTTTC‑CCCCCGCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCAtgt < 1:567780/90‑1 (MQ=255) gcTGTCGCCCAGCTTTTTTC‑CCCCCGCAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCAtgt < 1:214109/90‑1 (MQ=255) tttttttc‑CCGCCGAAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATc < 1:580305/87‑1 (MQ=255) tttttttc‑CCGCCGAAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATc < 1:1872068/87‑1 (MQ=255) tttttttc‑CCCCCGAAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATc < 1:947854/87‑1 (MQ=255) tttttt‑CCCCCCCAAAAAAAACCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATc < 2:1728352/89‑1 (MQ=255) tttttc‑CCGCCGAAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgc < 1:641885/89‑1 (MQ=255) tttttc‑CCCCCCCAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgc < 1:689858/89‑1 (MQ=255) ttttt‑CCCCCCCAAAAAAAC‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgc < 2:349279/90‑1 (MQ=255) ttttt‑CCCCCCAAAAAAAAC‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgc < 2:1277118/90‑1 (MQ=255) ttttt‑CCCCCCAAAAAAAAC‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgc < 2:603894/90‑1 (MQ=255) ttttt‑CCCCCCAAAAAAAAC‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAAACgc < 1:1113538/90‑1 (MQ=255) tttc‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctg < 2:1136396/90‑1 (MQ=255) tttc‑CCGCCAAAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctg < 1:1042003/90‑1 (MQ=255) tttc‑CCCCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctg < 1:448711/90‑1 (MQ=255) ttt‑CCCCCCGAACAAAAC‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctg < 1:1299490/90‑1 (MQ=255) ttccccgccaAAACAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctg < 2:1558704/86‑1 (MQ=255) tcccgccgAAACAAAG‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctgct < 1:1332669/88‑1 (MQ=255) gccgcAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGGAAGAGGAAAAAATTTTAACCCGGCCTGTTTTGTGGGGAAAGCTGCTggga > 1:245807/1‑88 (MQ=255) gccgcAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGGAAAAAAATTAAAACCCCCCTGTTTTGTGGGTATCGCTGATggga > 2:1000767/1‑88 (MQ=255) gccgcAAAAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTa < 1:521357/90‑1 (MQ=255) gccacAAAAAAC‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTa < 2:1647635/90‑1 (MQ=255) acaaAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAtg < 2:1607800/90‑1 (MQ=255) | ATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAA‑‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATG > NZ_CP009273/353514‑353689 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |