Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 497,020 | 0 | A | C | 54.2% | 8.4 / 31.1 | 24 | *559E (TAA→GAA) | ybaL | Kef family K(+) transporter |
Reads supporting (aligned to +/- strand): ref base A (11/0); new base C (0/13); total (11/13) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.01e-07 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.28e-05 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATT > NZ_CP009273/496936‑497107 | ttGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCg > 2:626363/1‑90 (MQ=255) gcgggCGCGTTTTACCATGCCTACTTTTTTTTCATATTTTACATCCGGCACCCCCCGTTTCCCCCGCCCCCCCCCCCCCCGCCGGTGGCg < 1:1782877/87‑1 (MQ=255) gCTGGCGCTTCTTATCATCCCTACATTTTTTTCATTTTTTACACCCGGCACCCCCCTTTTCCCCCGCCCCCCCCTCCCCCGCCGGTGGCg < 2:304923/90‑1 (MQ=255) cgcgTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTcc > 1:1011956/1‑90 (MQ=255) ttCTTATCATCCCTAATTTTTTTTCATATTTTCCCCCCGGCACCCCCCTTTTCCCCCGCCCCCCCCCCCCCCGCCGGTGGCGTTTCcagc < 2:1525506/89‑1 (MQ=255) gTCTTATCATGCCTCCATTTTTTTCATTTTTTACACCCGGCACCCCCCTTTTCCCCCGCCCCCCCCTCCCCCGCCGGTGGCGTTTCcagc < 2:375585/90‑1 (MQ=255) gTCTTATCATGCCTACATTTTTTTCATATTTTACATCCGGCAACCACCGTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCcagc < 1:674670/90‑1 (MQ=255) acagtATCATGCCTACTTTTTTTTCATTTTTTCCACCGGACACCCCCCTTTCCCCCCCCCCCCCCCCCCCCCGCCGGTGGCGTTTCcagc < 2:1192526/86‑1 (MQ=255) gCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCa > 1:464418/1‑90 (MQ=255) ccTACATTTTTTTCATTTTTTACATCCGGCACCCCCCTTTTCCCCCGTCCCCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCAt < 1:988004/90‑1 (MQ=255) ccTACATTTTTTTAATTTTTTACACCCGGCACCCCCCTTTTCCCCCGTCCCCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCAt < 1:1307759/90‑1 (MQ=255) ccTACATTTTTTTAATTTTTTACACCCGGCACCCCCCTTTTCCCCCGCCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCAt < 1:1455019/90‑1 (MQ=255) ccTACATTTTTTTAATTTTTTACACCCGGCACCCCCCGTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCAt < 1:1442509/90‑1 (MQ=255) aCATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCactgt > 1:1192526/1‑86 (MQ=255) aCATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGt > 1:1579783/1‑90 (MQ=255) ttttCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGc > 2:1696743/1‑90 (MQ=255) tatTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTc > 2:5294/1‑90 (MQ=255) acccGCCACCCCCCTTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGc < 1:1684581/88‑1 (MQ=255) cccGGCACCCCCCTTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGcc < 1:801346/89‑1 (MQ=255) ggCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCAt > 2:1248649/1‑90 (MQ=255) ggCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCAt > 1:463174/1‑90 (MQ=255) cccGTTTCCCCCGCCCCCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTAcc < 1:1350276/89‑1 (MQ=255) gTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGa > 2:1871866/1‑90 (MQ=255) ttACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGAtt > 2:1674203/1‑90 (MQ=255) | TTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATT > NZ_CP009273/496936‑497107 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |