| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 642,203 | 0 | T | G | 59.1% | 3.3 / 24.1 | 22 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| Reads supporting (aligned to +/- strand): ref base T (0/9); new base G (13/0); total (13/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.01e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.93e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGTTC‑GAATG‑CCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATGC > NZ_CP009273/642119‑642281 | gTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGTTC‑Gaa < 2:131270/90‑1 (MQ=255) ggTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGGGC‑GGATG‑c > 2:920219/1‑90 (MQ=255) cTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGTTC‑GAATG‑CCCCCtttt < 1:43382/90‑1 (MQ=255) gccgccTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGGTT‑GAATT‑CCCCCCCTTTg > 1:1772402/1‑90 (MQ=255) gccgccTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGGTCGGAAGG‑CCCCCttttt > 2:498374/1‑90 (MQ=255) gccgccTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGGTC‑GACAG‑CCCCCcttttt > 2:1731735/1‑89 (MQ=255) gccgccTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGGGT‑GGATG‑CCCCCcttttt > 2:1267373/1‑89 (MQ=255) cTGGACTGAGATTTCGTTCGATACCCTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGTTC‑GAATG‑CCCCCTTTTTGCaata < 2:1607061/90‑1 (MQ=255) cTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGTTC‑Ga < 2:46219/71‑1 (MQ=255) cTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGGTC‑Ga > 1:46219/1‑71 (MQ=255) ttcgttcgATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGGTC‑GGATG‑CCCCCTTTTTTCAATAATGTTTTCGccc > 1:498143/1‑89 (MQ=255) cccTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGTTC‑GAATG‑CCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAgc < 2:638622/90‑1 (MQ=255) cccTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGGTC‑GGATG‑CCCCCCTTTTTTTATAATATTTTTGCCCCCCGCCGTTGCCAgc > 2:48934/1‑90 (MQ=255) ccTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGGTT‑GGATG‑CCCCCCTTTTTTAATAAAATTTTTGCCCCCCGCCGTAGCCcgcg > 2:1810974/1‑90 (MQ=255) cGAACTGCCGGAGATAATCGAGATCGGCGGGGGTTC‑GAATG‑CCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGc < 2:1348632/90‑1 (MQ=255) cGAACTGCCGGAGATAATCGAGATCGGCGGGGGGTT‑GTATG‑GCCCCCTTTTTCAATAATTATTTGGCCTCCCGCCGTGGCCACCGCCggg > 1:1002392/1‑89 (MQ=255) aaCTGCCGGAGATAATCGAGATCGGCGGGGGGTC‑GGATG‑CCCCCCTTTTTTAATAAATTTTTTGCCCCCCGCCGTTGCCCGCGCCGGccc > 2:710906/1‑90 (MQ=255) gCCGGAGATAATCGAGATCGGCGGGGGGTT‑GGATGCCCCCCTTTTTTGAAAAAT‑TTTTTGCCCCCCGCCGTAGCCACCGCCCGccccccc > 2:1057143/1‑89 (MQ=255) gCCGGAGATAATCGAGATCGGCGGGGGGTC‑GAATG‑CCCCCTTTTTTCAATAATGTTTTCGCCCCCCGCTGTAGCCAGCGCAGGccccccc > 1:117971/1‑89 (MQ=255) tCGAGATCGGCGGGGGTTC‑GAATG‑CCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACcgcgc < 1:1810974/90‑1 (MQ=255) aTCGGCGGGGGTTC‑GAATG‑CCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATGc < 1:150270/90‑1 (MQ=255) aTCGGCGGGGGTTC‑GAATG‑CCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATGc < 1:710906/90‑1 (MQ=255) | GTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGGGGTTC‑GAATG‑CCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATGC > NZ_CP009273/642119‑642281 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |