Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3127428	3127475	48	3 [0]	[0] 2	yghS/yghT	dTMP kinase/dTMP kinase

TGTATTGAATATTACGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTT  >  NZ_CP009273/3127338‑3127427                                                                                          | tGTATTGAATATTACGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCtt  <  1:583273/90‑1 (MQ=255)                                      gTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCtt  <  1:448363/53‑1 (MQ=255)                                      gTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCtt  >  2:448363/1‑53 (MQ=255)                                                                                          | TGTATTGAATATTACGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTT  >  NZ_CP009273/3127338‑3127427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑