Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3448830	3448903	74	3 [1]	[0] 2	gspA/gspC	type II secretion system protein GspA/type II secretion system protein GspC

ACCCACCCAATCTATTTTATTAGAACATACATCGTGCCCACACTACGTTTCCCCTT  >  NZ_CP009273/3448904‑3448959 |                                                        acccacccAATCTATTTTATTAGAACATACATCGTGCCCACACTACGTTTCCCCtt  <  1:108114/56‑1 (MQ=255) acccacccAATCTATTTTATTAGAACATACATCGTGCCCACACTACGTTTCCCCtt  >  2:108114/1‑56 (MQ=255) |                                                        ACCCACCCAATCTATTTTATTAGAACATACATCGTGCCCACACTACGTTTCCCCTT  >  NZ_CP009273/3448904‑3448959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑