| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 45 (3.150) | 26/166 | 0.0 | 60.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 30 (2.100) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
CCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGATTTGTCC > NZ_CP009273/360017‑360193 | ccGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt < 1:158110/90‑1 (MQ=255) cGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAtt > 2:196493/1‑90 (MQ=255) cTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTcc < 1:232363/90‑1 (MQ=255) tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 2:302559/1‑90 (MQ=255) tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:186735/1‑90 (MQ=255) gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 2:270886/90‑1 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc > 1:272740/1‑90 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 1:28592/90‑1 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt > 2:152852/1‑90 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc < 1:209999/90‑1 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCGccccccccccc > 2:40169/1‑89 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCCGccccccccccc > 2:366663/1‑89 (MQ=39) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCCCCCC‑CCcgg > 1:155855/1‑90 (MQ=38) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGt < 2:277242/90‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTTCGATCCCCGATTCCTGGCAGTTTATGGCGGGGGTCCTTCCCCCCCCCCC‑CCCGGCCggt > 1:96337/1‑88 (MQ=25) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCGGCCCCCCCCCCC‑CCccgccggc > 1:386225/1‑88 (MQ=255) atAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGc < 1:152852/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCaa < 1:318170/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCaa < 2:139661/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCaa < 2:221952/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGACCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCaa < 2:264587/90‑1 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCTGCCCGCCACCCC‑CCCGGGCGTTTGTTCGCAACGGTc > 1:96601/1‑90 (MQ=21) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTCATGGCGGGCGTCCTGCCCGCCACCCC‑CCGGGCCGTTGCTTCGCAACGTTc > 1:151184/1‑90 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGGCGGCCCCCCCCCCC‑CCCCGCCCCCCCTTCCCCACGTTCAAATcccgtc > 2:377633/1‑86 (MQ=255) ccGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCTGCCCCCCCCCCC‑CCCGGCCGGTTCTTTGCCAAGTTCAAATCCCCC‑CCccgcg > 1:282484/1‑90 (MQ=9) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGAtt < 1:69382/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGAtt < 2:186735/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGAtt < 1:40169/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGAtt < 1:3231/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGAtt < 1:252724/90‑1 (MQ=255) ttaaTTCCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCTCCCCGGCCGTGGTTTC‑CGAAATTCCAAACCGCTCCCCGGCGGAtttt > 1:192683/3‑89 (MQ=2) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGATTTGTcc < 2:208962/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGATTTGTcc < 2:233273/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGATTTGTcc < 1:358359/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGATTTGTcc < 1:302559/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGATTTGTcc < 2:34956/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGATTTGTcc < 1:217106/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGATTTGTcc < 2:51791/90‑1 (MQ=35) | CCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCT‑CCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT‑CCCGGCGGATTTGTCC > NZ_CP009273/360017‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |