Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3406886	3406991	106	2 [1]	[0] 2	acrS/acrE	multidrug efflux transporter transcriptional repressor AcrS/multidrug efflux RND transporter periplasmic adaptor subunit AcrE

AGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAATCTATCACCTAATGT  >  NZ_CP009273/3406796‑3406898                                                                                          |              agagCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAATc               <  1:292164/90‑1 (MQ=255)              tGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAATCTATCACCTAAtgt  <  2:278789/90‑1 (MQ=255)                                                                                          |              AGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAATCTATCACCTAATGT  >  NZ_CP009273/3406796‑3406898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑