Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3463332	3463411	80	2 [0]	[1] 2	chiA/tuf	bifunctional chitinase/lysozyme/elongation factor Tu

GAACCCTTCAATATGAATTAAATTACGGCATTAAAAATAAGAAAAAAGCCTG  >  NZ_CP009273/3463280‑3463331                                                    | gaACCCTTCAATATGAATTAAATTACGGCATTAAAAATAAGAAAAAAGCCTg  <  1:6165/52‑1 (MQ=255) gaACCCTTCAATATGAATTAAATTACGGCATTAAAAATAAGAAAAAAGCCTg  >  2:6165/1‑52 (MQ=255)                                                    | GAACCCTTCAATATGAATTAAATTACGGCATTAAAAATAAGAAAAAAGCCTG  >  NZ_CP009273/3463280‑3463331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑