Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3551498	3551549	52	2 [0]	[1] 2	rtcB/rtcR	RNA‑splicing ligase RtcB/DNA‑binding transcriptional regulator RtcR

TTTTCTCTTTTCGTTGTTTGCTGTCCTGATAATTGCAACCGTCGTGCCAGAAAA  >  NZ_CP009273/3551444‑3551497                                                      | ttttCTCTTTTCGTTGTTTGCTGTCCTGATAATTGCAACCGTCGTGCCAGaaaa  >  1:241576/1‑54 (MQ=255) ttttCTCTTTTCGTTGTTTGCTGTCCTGATAATTGCAACCGTCGTGCCAGaaaa  <  2:241576/54‑1 (MQ=255)                                                      | TTTTCTCTTTTCGTTGTTTGCTGTCCTGATAATTGCAACCGTCGTGCCAGAAAA  >  NZ_CP009273/3551444‑3551497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑