Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3792518	3792725	208	4 [0]	[0] 2	[waaU]–[waaZ]	[waaU],[waaZ]

AAAGTTCACGATAAATCGAACTTAATACAATTAGATCACCA  >  NZ_CP009273/3792477‑3792517                                         | aaaGTTCACGATAAATCGAACTTAATACAATTAGATCACCa  >  1:234955/1‑41 (MQ=255) aaaGTTCACGATAAATCGAACTTAATACAATTAGATCACCa  <  2:234955/41‑1 (MQ=255)  aaGTTCACGATAAATCGAACTTAATACAATTAGATCACCa  <  1:96366/40‑1 (MQ=255)  aaGTTCACGATAAATCGAACTTAATACAATTAGATCACCa  >  2:96366/1‑40 (MQ=255)                                         | AAAGTTCACGATAAATCGAACTTAATACAATTAGATCACCA  >  NZ_CP009273/3792477‑3792517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑