Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3794212	3794260	49	2 [1]	[1] 2	rfaY	lipopolysaccharide core heptose(II) kinase RfaY

ACGCTTAACTTTCGGAGAAAAAACCTTAAGAATCAATTTACCGTAATCGGTATCAATAAGCATAACTTTTGTATCATCAATAGAACGAAAAACCTTGATG  >  NZ_CP009273/3794122‑3794221                                                                                          |           aCGCTTAACTTTCGGAGAAAAAACCTTAAGAATCAATTTACCGTAATCGGTATCAATAAGCATAACTTTTGTATCATCAATAGAACGaaa            <  2:373209/90‑1 (MQ=255)           ttCGGAGAAAAAACCTTAAGAATCAATTTACCGTAATCGGTATCAATAAGCATAACTTTTGTATCATCAATAGAACGAAAAACCTtgatg  <  1:349835/90‑1 (MQ=255)                                                                                          |           ACGCTTAACTTTCGGAGAAAAAACCTTAAGAATCAATTTACCGTAATCGGTATCAATAAGCATAACTTTTGTATCATCAATAGAACGAAAAACCTTGATG  >  NZ_CP009273/3794122‑3794221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑