Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3798103	3798259	157	4 [1]	[0] 2	rfaS	LPS core biosynthesis protein RfaS

TGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTCCCTATAAATCTATGC  >  NZ_CP009273/3798013‑3798117                                                                                          |                tggctgTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTc                 <  1:199244/90‑1 (MQ=255)                tCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTCCCTATAAATCTATGc  <  2:113850/90‑1 (MQ=255)                                ttctaatttcATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTc                 <  1:201797/59‑1 (MQ=255)                                ttctaatttcATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTc                 >  2:201797/1‑59 (MQ=255)                                                                                          |                TGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTCCCTATAAATCTATGC  >  NZ_CP009273/3798013‑3798117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑