Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4272556	4272611	56	2 [1]	[0] 2	espX5	T3SS effector pentapeptide repeat protein EspX5

GAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATACCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTC  >  NZ_CP009273/4272466‑4272581                                                                                          |                           gAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATACCTTTCAGGCTAAGGtgtg                            >  1:265985/1‑90 (MQ=255)                           ccTGCAAAATTCGAATTGGATAAATCTTCATCCTTAATCACGATACCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTActgtc  <  2:261584/90‑1 (MQ=255)                                                                                          |                           GAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATACCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTC  >  NZ_CP009273/4272466‑4272581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑