Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1524387	1524418	32	2 [0]	[0] 2	[BW25113_RS26145]	[BW25113_RS26145]

CACTGTGGAGTGGTTGATATAAATCTTAATTTTTTCAA  >  NZ_CP009273/1524419‑1524456 |                                      cACTGTGGAGTGGTTGATATAAATCTTAATTTTTTCaa  >  1:38221/1‑38 (MQ=255) cACTGTGGAGTGGTTGATATAAATCTTAATTTTTTCaa  <  2:38221/38‑1 (MQ=255) |                                      CACTGTGGAGTGGTTGATATAAATCTTAATTTTTTCAA  >  NZ_CP009273/1524419‑1524456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑