Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1797606	1797667	62	3 [1]	[1] 5	espL1	type III secretion system effector EspL1

CTATAAAAAAGAAATCATTTCCTTATTACTGGAAACCACGCCTATTAAAGCTAACCATTTGCGAAGCATACTGGATTATATTGAACAGGAACAGTTAACTGCTGAAGATCGTAACCATTG  >  NZ_CP009273/1797638‑1797757                               |                                                                                          cTATAAAAAAGAAATCATTTCCTTATTACTGGAAACCACGCCTATTAAAGCTAACCATTTGCGAAGCATACTGGATTATGTTgaacagga                                >  1:349178/1‑90 (MQ=255)                               ggAAACCACGCCTATTAAAGCTAACCATTTGCGAAGCATACTGGATTATATTGAACAGGAACAGTTAACTGCTGAAGATCGTAACCAt    >  1:42190/1‑88 (MQ=255)                               ggAAACCACGCCTATTAAAGCTAACCATTTGCGAAGCATACTGGATTATATTGAACAGGAACAGTTAACTGCTGAAGATCGTAACCAt    <  2:42190/88‑1 (MQ=255)                               ggAAACCACGCCTATTAAAGCTAACCATTTGCGAAGCATACTGGATTATATTGAACAGGAACAGTTAACTGCTGAAGATCGTAACCATTg  >  2:196769/1‑90 (MQ=255)                               ggAAACCACGCCTATTAAAGCTAACCATTTGCGAAGCATACTGGATTATATTGAACAGGAACAGTTAACTGCTGAAGATCGTAACCATTg  >  2:223361/1‑90 (MQ=255)                               |                                                                                          CTATAAAAAAGAAATCATTTCCTTATTACTGGAAACCACGCCTATTAAAGCTAACCATTTGCGAAGCATACTGGATTATATTGAACAGGAACAGTTAACTGCTGAAGATCGTAACCATTG  >  NZ_CP009273/1797638‑1797757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑