Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2161065	2161097	33	2 [1]	[1] 3	[BW25113_RS24065]	[BW25113_RS24065]

TCACTCATTATCTTCTGTTTCGTACCCCACATCAGAAAGCCTGACCTCAAGCTCTAATGACGTCGTGAAGCCGCTATTATTCAGAAAATGTGTCACCTTAGTGAT  >  NZ_CP009273/2161083‑2161187                |                                                                                          tCACTCATTATCTTCTGTTTCGTACCCCACATCAGAAAGCCTGACCTCAAGCTCTAATGACGTCGTGAAGCCGCTATTATTCAGAAAAtg                 >  1:354561/1‑90 (MQ=255)                tGTTTCGTACCCCACATCAGAAAGCCTGACCTCAAGCTCTAATGACGTCGTGAAGCCGCTATTATTCAGAAAATGTGTCACCTTAGTGAt  <  1:159321/90‑1 (MQ=255)                tGTTTCGTACCCCACATCAGAAAGCCTGACCTCAAGCTCTAATGACGTCGTGAAGCCGCTATTATTCAGAAAATGTGTCACCTTAGTGAt  >  2:253154/1‑90 (MQ=255)                |                                                                                          TCACTCATTATCTTCTGTTTCGTACCCCACATCAGAAAGCCTGACCTCAAGCTCTAATGACGTCGTGAAGCCGCTATTATTCAGAAAATGTGTCACCTTAGTGAT  >  NZ_CP009273/2161083‑2161187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑