| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 322269 | 12 (0.840) | 3 (0.240) | 3/150 | 1.1 | 21.0% | coding (690/1671 nt) | betA | choline dehydrogenase |
| ? | NZ_CP009273 | = 322352 | 12 (0.960) | coding (607/1671 nt) | betA | choline dehydrogenase | |||||
GCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGC > NZ_CP009273/322182‑322358 | gcCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGttt > 1:397064/1‑90 (MQ=255) tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc < 1:279988/90‑1 (MQ=255) tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc < 2:397064/90‑1 (MQ=255) tgGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCa > 1:83278/1‑90 (MQ=255) gTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg < 2:207256/90‑1 (MQ=255) gTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTggctatctcgatcaggccaaatcgcgtcctaacctgaccattcgtactcac > 2:248867‑M1/1‑39 (MQ=255) gTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTc > 1:191506/1‑47 (MQ=255) gTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTc < 2:191506/47‑1 (MQ=255) gTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATg > 1:332949/1‑84 (MQ=255) gTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATg < 2:332949/84‑1 (MQ=255) gTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTggctatctcgatcaggccaaatcgcgtcctaacctgaccattcgtactcacgctat > 2:83278‑M1/1‑34 (MQ=255) gTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAgg > 1:3385/1‑90 (MQ=255) gTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAgg > 2:166519/1‑90 (MQ=255) aTTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCt > 2:127000/1‑90 (MQ=255) gACGCCCACCGCGCGTggctatctcgatcaggccaaatcgcgtcctaacctgaccattcgtactcacgctatgaccgatcacatcatttt < 1:248867‑M1/90‑75 (MQ=255) cgcgcgTggctatctcgatcaggccaaatcgcgtcctaacctgaccattcgtactcacgctatgaccgatcacatcatttttgacggcaa < 1:335332‑M1/90‑84 (MQ=255) gcgcgTggctatctcgatcaggccaaatcgcgtcctaacctgaccattcgtactcacgctatgaccgatcacatcatttttgacggcaaa > 2:24607‑M1/1‑6 (MQ=255) gcgcgTggctatctcgatcaggccaaatcgcgtcctaacctgaccattcgtactcacgctatgaccgatcacatcatttttgacggcaaa > 2:1864‑M1/1‑6 (MQ=255) tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCacgcgc > 2:24607‑M2/1‑84 (MQ=255) tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCacgcgc > 2:1864‑M2/1‑84 (MQ=255) | GCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGC > NZ_CP009273/322182‑322358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |