Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1242991	1243005	15	5 [1]	[0] 2	treA/dhaM	alpha,alpha‑trehalase/dihydroxyacetone kinase phosphoryl donor subunit DhaM

GCACTAGCTGCATGATCGAAATCTCATTCTGCGAACTGTCAGGCATTTTAGAAAAGGGAATTAAAGGGATAAATAACGGCGAAATAGAGTGATCAAATAAC  >  NZ_CP009273/1242901‑1243001                                                                                          |            gCACTAGCTGCATGATCGAAATCTCATTCTGCGAACTGTCAGGCATTTTAGAAAAGGGAATTAAAGGGATAAATAACGGCGAAATAGAGt             >  1:124266/1‑90 (MQ=255) gCACTAGCTGCATGATCGAAATCTCATTCTGCGAACTGTCAGGCATTTTAGAAAAGGGAATTAAAGGGATAAATAACGGCGAAATAGAGt             <  1:132320/90‑1 (MQ=255) gCACTAGCTGCATGATCGAAATCTCATTCTGCGAACTGTCAGGCATTTTAGAAAAGGGAATTAAAGGGATAAATAACGGCGAAATAGAGt             <  1:87779/90‑1 (MQ=255) gCACTAGCTGCATGATCGAAATCTCATTCTGCGAACTGTCAGGCATTTTAGAAAAGGGAATTAAAGGGATAAATAACGGCGAAATAGAGt             >  2:326052/1‑90 (MQ=255)            aTGATCGAAATCTCATTCTGCGAACTGTCAGGCATTTTAGAAAAGGGAATTAGAGGGATAAATAACGGCGAAATAGAGTGATCAAATAAc  >  1:326464/1‑90 (MQ=255)                                                                                          |            GCACTAGCTGCATGATCGAAATCTCATTCTGCGAACTGTCAGGCATTTTAGAAAAGGGAATTAAAGGGATAAATAACGGCGAAATAGAGTGATCAAATAAC  >  NZ_CP009273/1242901‑1243001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑