Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2137679	2137694	16	2 [0]	[1] 2	dgcE	diguanylate cyclase

TCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTC  >  NZ_CP009273/2137638‑2137678                                         | tCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTc  >  1:192053/1‑41 (MQ=255) tCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTc  <  2:192053/41‑1 (MQ=255)                                         | TCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTC  >  NZ_CP009273/2137638‑2137678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑